real_transcripts: Differential expression of DHT treated LNCaP cell line

In target: Predict Combined Function of Transcription Factors

Description

The differential expression analysis output of LNCaP cell line treated with DHT for 16 hours compared to non-treated cells. The REFSEQ transcript identifiers were used to merge the data.frame with the transcript coordinates from the hg19 reference genome.

Usage

real_transcripts

Format

A GRanges

Source

https://github.com/suwangbio/BETA/blob/master/BETA_test_data/AR_diff_expr.xls

https://github.com/suwangbio/BETA/blob/master/BETA_1.0.7/BETA/references/hg19.refseq

See Also

real_peaks

sim_transcripts

Examples

# load data
data('real_transcripts')

# locate the raw data
system.file('extdata', 'AR_diff_expr.tsv.gz', package = 'target')
system.file('extdata', 'hg19.refseq', package = 'target')

# locate the source code for preparing the data
system.file('extdata', 'make-data.R', package = 'target')

target documentation built on Nov. 8, 2020, 5:28 p.m.