target: 'target': Predict Combined Function of Transcription Factors.

In target: Predict Combined Function of Transcription Factors

Description

Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013) <doi: 10.1038/nprot.2013.150>. Extend the algorithm to predict the combined effect of two DNA-binding elements from comprable binding and expression data.

Details

Predicting associated peaks and direct targets

associated_peaks direct_targets

Plotting and testing predictions plot_predictions test_predictions

Internal target functions: merge_ranges find_distance score_peaks score_regions rank_product

target documentation built on Nov. 8, 2020, 5:28 p.m.