score_regions: Calculate region scores

In target: Predict Combined Function of Transcription Factors

Description

Calculate the region score based on the distance to their assigned peaks.

Usage

score_regions(peak_score, region_id)

Arguments

peak_score	A vector of integers
region_id	A vector of character

Value

A vector of numerics

Examples

library(IRanges)

query <- IRanges(c(1, 4, 9), c(5, 7, 10))
subject <- IRanges(c(2, 2, 10), c(2, 3, 12))
distance <- find_distance(query, subject)
peak_score <- score_peaks(distance, 100000)
region_id <- c('region1', 'region1', 'region2')
region_score <- score_regions(peak_score, region_id)

target documentation built on Nov. 8, 2020, 5:28 p.m.