associated_peaks: Predict associated peaks

In target: Predict Combined Function of Transcription Factors

Description

This function selects overlapping peaks and regions, calculates the distance between them and score each peak.

Usage

associated_peaks(peaks, regions, regions_col, base = 1e+05)

Arguments

peaks	A GRanges object
regions	A GRanges object
regions_col	A character string
base	An integer to calculate distances relative to.

Value

A GRanges object. A similar object to peaks with three added metadata columns.

Examples

# load peaks and transcripts data
data("real_peaks")
data("real_transcripts")

# associated peaks
ap <- associated_peaks(real_peaks, real_transcripts, 'name2')

target documentation built on Nov. 8, 2020, 5:28 p.m.