ppareto: Cumulative distribution function of the Pareto distributions...

In vulcan: VirtUaL ChIP-Seq data Analysis using Networks

Description

Cumulative distribution function of the Pareto distributions ' Gives NA on values < threshold

Usage

ppareto(x, threshold = 1, exponent, lower.tail = TRUE)

Arguments

x	Data vector, lower threshold, scaling exponent, usual flags
threshold	numeric value to define the start of the tail
exponent	the exponent obtained from the pareto.fit function
lower.tail	logical. If the lower tail of the distribution should be considered. Default is TRUE

Value

Vector of (log) probabilities

Examples

# Estimate the tail of a pospulation normally distributed
set.seed(1)
x<-rnorm(1000)
q95<-as.numeric(quantile(abs(x),0.95))
fit<-pareto.fit(abs(x),threshold=q95)
# We can infer the pvalue of a value very much right to the tail of the
# distribution
value<-5
pvalue<-ppareto(value, threshold=q95, exponent=fit$exponent,
lower.tail=FALSE)/20
plot(density(abs(x)),xlim=c(0,value+0.3),main='Pareto fit')
arrows(value,0.2,value,0)
text(value,0.2,labels=paste0('p=',signif(pvalue,2)))

vulcan documentation built on Nov. 8, 2020, 8:15 p.m.