Nothing
.computeLLcpp <- function(param, getLL.args = list()){
if(length(getLL.args$mean) == 0 || is.na(getLL.args$mean)) getLL.args$mean <- mean(getLL.args$dur, na.rm = TRUE)
#combines the param and fixedParam into the full param vector if there are fixed parameters:
if(length(getLL.args$fixedParamPos) != 0)
param <- .returnfixedPara(freePara = param, fixedParam = getLL.args$fixedParam, fixedParamPos = getLL.args$fixedParamPos)
distPara <- .seperateStartPara(param, getLL.args$model, getLL.args$distCode, getLL.args$order, J = getLL.args$J)$distStartPara
if(is.null(distPara)) distPara <- 0
CppFunction <- switch(getLL.args$model,
ACD = .computeScoreACD,
LACD1 = .computeScoreLACD1,
LACD2 = .computeScoreLACD2,
EXACD = .computeScoreEXACD,
BACD = .computeScoreBACD,
BCACD = .computeScoreBCACD,
AMACD = .computeScoreAMACD,
ABACD = .computeScoreABACD,
SNIACD = .computeScoreSNIACD,
LSNIACD = .computeScoreLSNIACD,
TACD = .computeScoreTACD,
TAMACD = .computeScoreTAMACD,
AACD = .computeScoreAACD,
stop("model not supported"))
if(is.null(getLL.args$returnIndex)) getLL.args$returnIndex <- 1
if(getLL.args$model %in% c("SNIACD", "LSNIACD", "TACD", "TAMACD")){
temp <- CppFunction(x = getLL.args$dur,
param = param,
order = getLL.args$order,
mean = getLL.args$mean,
dist = getLL.args$distCode,
distPara = distPara,
newDay = getLL.args$newDay,
forceErrExpec = getLL.args$forceErrExpec,
returnIndex = ifelse(getLL.args$returnIndex == 5, 3, getLL.args$returnIndex),
startType = getLL.args$startType,
bp = getLL.args$breakPoints)
} else{
temp <- CppFunction(x = getLL.args$dur,
param = param,
order = getLL.args$order,
mean = getLL.args$mean,
dist = getLL.args$distCode,
distPara = distPara,
newDay = getLL.args$newDay,
forceErrExpec = getLL.args$forceErrExpec,
returnIndex = ifelse(getLL.args$returnIndex == 5, 3, getLL.args$returnIndex),
startType = getLL.args$startType)
}
if(getLL.args$returnIndex == 5){
unfixedParams <- rep(TRUE, length(param))
if(length(getLL.args$fixedParamPos) != 0) if(sum(getLL.args$fixedParamPos) > 0) unfixedParams <- !getLL.args$fixedParamPos
assign("score", -temp$score[unfixedParams], envir = ACDmGlobalEnv)
assign("scoreParam", param, envir = ACDmGlobalEnv)
}
if(getLL.args$trace != 0)
assign("ACDmOptimTrace", c(get("ACDmOptimTrace", envir = ACDmGlobalEnv), param, temp$LL), envir = ACDmGlobalEnv)
if(getLL.args$returnIndex == 1 || getLL.args$returnIndex == 5) return(-temp$LL)
else return(temp)
}
.getScoreCpp <- function(param, getLL.args = list()){
## This function checks if the score was already computed, and if so returns it.
## If not, the score is computed and then returned
score <- get("score", envir = ACDmGlobalEnv)
scoreParam <- get("scoreParam", envir = ACDmGlobalEnv)
unfixedParams <- rep(TRUE, length(param))
if(length(getLL.args$fixedParamPos) != 0) if(sum(getLL.args$fixedParamPos) > 0) unfixedParams <- !getLL.args$fixedParamPos
getLL.args$returnIndex <- 3
if(is.null(score)) return(-.computeLLcpp(param, getLL.args)$score[unfixedParams])
if(is.null(scoreParam)) return(-.computeLLcpp(param, getLL.args)$score[unfixedParams])
if(length(scoreParam) != length(param)) return(-.computeLLcpp(param, getLL.args)$score[unfixedParams])
if(!isTRUE(all.equal(scoreParam, param))) return(-.computeLLcpp(param, getLL.args)$score[unfixedParams])
return(score)
}
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