mergeCloneSizes: Merge a list of Clustered Clonotype Frequency Tables
In APackOfTheClones: Visualization of Clonal Expansion for Single Cell Immune Profiles
View source: R/get_clone_sizes.R
mergeCloneSizes R Documentation
Merge a list of Clustered Clonotype Frequency Tables
Description
The list of clustered clonotype frequencies from countCloneSizes
can be merged by this function to a frequency table of all clonotypes
similar to the data that can be seen in the seurat object metadata.
By default, this function sorts the table with largest clonotypes first,
and this may be useful for quickly gauging which clonotypes are the most
expanded overall.
Usage
mergeCloneSizes(clustered_clone_sizes, sort_decreasing = TRUE)
Arguments
clustered_clone_sizes
the output of countCloneSizes.
sort_decreasing
a logical or NULL. If TRUE/FALSE, sorts the
table by clonotype frequency with largest/smallest clones first, and if
NULL, no order is guaranteed but the output is deterministic.
Value
a table object
See Also
countCloneSizes
Examples
clustered_clone_sizes <- countCloneSizes(get(data("combined_pbmc")))
mergeCloneSizes(clustered_clone_sizes)
APackOfTheClones documentation built on Oct. 11, 2024, 1:08 a.m.
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View source: R/get_clone_sizes.R
| mergeCloneSizes | R Documentation |
Merge a list of Clustered Clonotype Frequency Tables
Description
The list of clustered clonotype frequencies from countCloneSizes can be merged by this function to a frequency table of all clonotypes similar to the data that can be seen in the seurat object metadata. By default, this function sorts the table with largest clonotypes first, and this may be useful for quickly gauging which clonotypes are the most expanded overall.
Usage
mergeCloneSizes(clustered_clone_sizes, sort_decreasing = TRUE)
Arguments
clustered_clone_sizes |
the output of countCloneSizes. |
sort_decreasing |
a logical or NULL. If |
Value
a table object
See Also
countCloneSizes
Examples
clustered_clone_sizes <- countCloneSizes(get(data("combined_pbmc")))
mergeCloneSizes(clustered_clone_sizes)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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