deleteApotcData: Delete the results of an APackOfTheClones run

In APackOfTheClones: Visualization of Clonal Expansion for Single Cell Immune Profiles

Delete the results of an APackOfTheClones run

Description

A convenience function to erase all data associated with a particular run, including the ApotcData and command in seurat_obj@command. The run_id would be no longer accessible afterwards.

Usage

deleteApotcData(seurat_obj, run_id)

Arguments

seurat_obj	a seurat object that has had RunAPOTC ran on it before in order of the functions being called.
run_id	character. The id of the associated ApotcRun.

Value

The modified input seurat object

Examples

pbmc <- RunAPOTC(
    seurat_obj = get(data("combined_pbmc")),
    reduction_base = "umap",
    clonecall = "strict",
    run_id = "run1",
    verbose = FALSE
)

getApotcDataIds(pbmc)
#> [1] "run1"

# delete the data
pbmc <- deleteApotcData(pbmc, "run1")

getApotcDataIds(pbmc)
#> NULL

APackOfTheClones documentation built on Oct. 11, 2024, 1:08 a.m.