renameApotcRun: Rename an APackOfTheClones run

In APackOfTheClones: Visualization of Clonal Expansion for Single Cell Immune Profiles

Rename an APackOfTheClones run

Description

A function to rename an APackOfTheClones run identified by its run id in a Seurat object.

Usage

renameApotcRun(seurat_obj, old_run_id, new_run_id)

Arguments

seurat_obj	A Seurat object containing APackOfTheClones data - the output of RunAPOTC()
old_run_id	Character. The current id of the APackOfTheClones run to be renamed.
new_run_id	Character. The new id to assign to the APackOfTheClones run.

Value

A Seurat object with the APackOfTheClones run renamed.

Examples

pbmc <- RunAPOTC(
    seurat_obj = get(data("combined_pbmc")),
    reduction_base = "umap",
    clonecall = "strict",
    run_id = "run1",
    verbose = FALSE
)

pbmc <- renameApotcRun(pbmc, "run1", "new_run")
# Now "run1" has been renamed to "new_run"

APackOfTheClones documentation built on Oct. 11, 2024, 1:08 a.m.