containsApotcRun: Check for the existence of an APackOfTheClones run with its...

In APackOfTheClones: Visualization of Clonal Expansion for Single Cell Immune Profiles

Check for the existence of an APackOfTheClones run with its run id

Description

A convenience function to check for the existence of an APackOfTheClones run with its run id, regardless of if any run has been made

Usage

containsApotcRun(seurat_obj, run_id)

Arguments

seurat_obj	a seurat object
run_id	character. The id of the associated ApotcRun.

Value

A logical indicating whether the run exists.

Examples

pbmc <- RunAPOTC(
    seurat_obj = get(data("combined_pbmc")),
    reduction_base = "umap",
    clonecall = "strict",
    run_id = "run1",
    verbose = FALSE
)

containsApotcRun(pbmc, "run1")
#> [1] TRUE

containsApotcRun(pbmc, "run2")
#> [1] FALSE

APackOfTheClones documentation built on Oct. 11, 2024, 1:08 a.m.