getApotcDataIds: Get all run ids of previous RunAPOTC runs on a seurat object

In APackOfTheClones: Visualization of Clonal Expansion for Single Cell Immune Profiles

Get all run ids of previous RunAPOTC runs on a seurat object

Description

A convenience function to get all run ids of previous RunAPOTC run IDs

Usage

getApotcDataIds(seurat_obj)

Arguments

seurat_obj

a seurat object that has had RunAPOTC ran on it before in order of the functions being called.

Value

a character vector of all run ids of previous RunAPOTC runs, in the order they were ran in. If there are no runs on the object, it returns NULL.

Examples

pbmc <- RunAPOTC(
    seurat_obj = get(data("combined_pbmc")),
    reduction_base = "umap",
    clonecall = "strict",
    verbose = FALSE
)

getApotcDataIds(pbmc)
#> [1] "umap;CTstrict;_;_"

pbmc <- RunAPOTC(
    seurat_obj = pbmc,
    reduction_base = "umap",
    clonecall = "gene",
    verbose = FALSE
)

getApotcDataIds(pbmc)
#> [1] "umap;CTstrict;_;_" "umap;CTgene;_;_"

APackOfTheClones documentation built on Oct. 11, 2024, 1:08 a.m.