writeParameterObject: Write Parameter Object to a File

In AnaCoDa: Analysis of Codon Data under Stationarity using a Bayesian Framework

Description

writeParameterObject will write the parameter object as binary to the filesystem

Usage

writeParameterObject(parameter, file)

Arguments

parameter	parameter on object created by initializeParameterObject.
file	A filename that where the data will be stored.

Details

As Rcpp object are not serializable with the default R save function, therefore this custom save function is provided (see loadParameterObject).

Value

This function has no return value.

Examples

## Not run: 

genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")

genome <- initializeGenomeObject(file = genome_file)
sphi_init <- c(1,1)
numMixtures <- 2
geneAssignment <- c(rep(1,floor(length(genome)/2)),rep(2,ceiling(length(genome)/2)))
parameter <- initializeParameterObject(genome = genome, sphi = sphi_init, 
                                       num.mixtures = numMixtures, 
                                       gene.assignment = geneAssignment, 
                                       mixture.definition = "allUnique")

## writing an empty parameter object as the runMCMC routine was not called yet
writeParameterObject(parameter = parameter, file = file.path(tempdir(), "file.Rda"))


## End(Not run)

AnaCoDa documentation built on Jan. 8, 2021, 2:37 a.m.