Description Usage Arguments Details Value References See Also Examples
View source: R/select.estimate.R
Provides the selected graph based on credible intervals for the partial correlations that did not contain zero \insertCiteWilliams2019BGGM.
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object |
An object of class |
cred |
Numeric. The credible interval width for selecting the graph (defaults to 0.95; must be between 0 and 1). |
alternative |
A character string specifying the alternative hypothesis. It must be one of "two.sided" (default), "greater" or "less". See note for futher details. |
... |
Currently ignored. |
This package was built for the social-behavioral sciences in particular. In these applications, there is
strong theory that expects all effects to be positive. This is known as a "positive manifold" and
this notion has a rich tradition in psychometrics. Hence, this can be incorporated into the graph with
alternative = "greater"
. This results in the estimated structure including only positive edges.
The returned object of class select.estimate
contains a lot of information that
is used for printing and plotting the results. For users of BGGM, the following
are the useful objects:
pcor_adj
Selected partial correlation matrix (weighted adjacency).
adj
Adjacency matrix for the selected edges
object
An object of class estimate
(the fitted model).
estimate
and ggm_compare_estimate
for several examples.
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