Man pages for BGGM
Bayesian Gaussian Graphical Models

asd_ocdData: Autism and Obssesive Compulsive Disorder
bfiData: 25 Personality items representing 5 factors
bggm_missingGGM: Missing Data
BGGM-packageBGGM: Bayesian Gaussian Graphical Models
coef.estimateCompute Regression Parameters for 'estimate' Objects
coef.exploreCompute Regression Parameters for 'explore' Objects
confirmGGM: Confirmatory Hypothesis Testing
constrained_posteriorConstrained Posterior Distribution
convergenceMCMC Convergence
cswsData: Contingencies of Self-Worth Scale (CSWS)
depression_anxiety_t1Data: Depression and Anxiety (Time 1)
depression_anxiety_t2Data: Depression and Anxiety (Time 2)
estimateGGM: Estimation
exploreGGM: Exploratory Hypothesis Testing
fisher_r_to_zFisher Z Transformation
fisher_z_to_rFisher Z Back Transformation
gen_ordinalGenerate Ordinal and Binary data
ggm_compare_confirmGGM Compare: Confirmatory Hypothesis Testing
ggm_compare_estimateGGM Compare: Estimate
ggm_compare_exploreGGM Compare: Exploratory Hypothesis Testing
ggm_compare_ppcGGM Compare: Posterior Predictive Check
gssData: 1994 General Social Survey
ifitData: ifit Intensive Longitudinal Data
impute_dataObtain Imputed Datasets
iriData: Interpersonal Reactivity Index (IRI)
mapMaximum A Posteriori Precision Matrix
pcor_matExtract the Partial Correlation Matrix
pcor_sumPartial Correlation Sum
pcor_to_corCompute Correlations from the Partial Correlations
plot.confirmPlot 'confirm' objects
plot.ggm_compare_ppcPlot 'ggm_compare_ppc' Objects
plot.pcor_sumPlot 'pcor_sum' Object
plot.predictabilityPlot 'predictability' Objects
plot_priorPlot: Prior Distribution
plot.roll_your_ownPlot 'roll_your_own' Objects
plot.selectNetwork Plot for 'select' Objects
plot.summary.estimatePlot 'summary.estimate' Objects
plot.summary.explorePlot 'summary.explore' Objects
plot.summary.ggm_compare_estimatePlot 'summary.ggm_compare_estimate' Objects
plot.summary.ggm_compare_explorePlot 'summary.ggm_compare_explore' Objects
plot.summary.select.explorePlot 'summary.select.explore' Objects
plot.summary.var_estimatePlot 'summary.var_estimate' Objects
posterior_predictPosterior Predictive Distribution
posterior_samplesExtract Posterior Samples
precisionPrecision Matrix Posterior Distribution
predictabilityPredictability: Bayesian Variance Explained (R2)
predicted_probabilityPredicted Probabilities
predict.estimateModel Predictions for 'estimate' Objects
predict.exploreModel Predictions for 'explore' Objects
predict.var_estimateModel Predictions for 'var_estimate' Objects
print.BGGMPrint method for 'BGGM' objects
ptsdData: Post-Traumatic Stress Disorder
ptsd_cor1Data: Post-Traumatic Stress Disorder (Sample # 1)
ptsd_cor2Data: Post-Traumatic Stress Disorder (Sample # 2)
ptsd_cor3Data: Post-Traumatic Stress Disorder (Sample # 3)
ptsd_cor4Data: Post-Traumatic Stress Disorder (Sample # 4)
regression_summarySummarary Method for Multivariate or Univarate Regression
roll_your_ownCompute Custom Network Statistics
rsaData: Resilience Scale of Adults (RSA)
SachsData: Sachs Network
selectS3 'select' method
select.estimateGraph Selection for 'estimate' Objects
select.exploreGraph selection for 'explore' Objects
select.ggm_compare_estimateGraph Selection for 'ggm_compare_estimate' Objects
select.ggm_compare_exploreGraph selection for 'ggm_compare_explore' Objects
select.var_estimateGraph Selection for 'var.estimate' Object
summary.coefSummarize 'coef' Objects
summary.estimateSummary method for 'estimate.default' objects
summary.exploreSummary Method for 'explore.default' Objects
summary.ggm_compare_estimateSummary method for 'ggm_compare_estimate' objects
summary.ggm_compare_exploreSummary Method for 'ggm_compare_explore' Objects
summary.predictabilitySummary Method for 'predictability' Objects
summary.select.exploreSummary Method for 'select.explore' Objects
summary.var_estimateSummary Method for 'var_estimate' Objects
tasData: Toronto Alexithymia Scale (TAS)
var_estimateVAR: Estimation
weighted_adj_matExtract the Weighted Adjacency Matrix
women_mathData: Women and Mathematics
zero_order_corsZero-Order Correlations
BGGM documentation built on Aug. 20, 2021, 5:08 p.m.