BIGDAWG: Case-Control Analysis of Multi-Allelic Loci
Version 1.14.2

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) . Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) .

Getting started

Package details

AuthorDerek Pappas <dpappas@chori.org>, Steve Mack <sjmack@chori.org>, Jill Hollenbach <Jill.Hollenbach@ucsf.edu>
Date of publication2017-07-19 07:48:15 UTC
MaintainerSteve Mack <sjmack@chori.org>
LicenseGPL (>= 3)
Version1.14.2
URL http://tools.immunogenomics.org/ https://github.com/IgDAWG/BIGDAWG
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("BIGDAWG")

Try the BIGDAWG package in your browser

Any scripts or data that you put into this service are public.

BIGDAWG documentation built on July 19, 2017, 9:01 a.m.