Check.Params: Check Input Parameters

In BIGDAWG: Case-Control Analysis of Multi-Allelic Loci

Description

Check input parameters for invalid entries.

Usage

Check.Params(
  HLA,
  Loci.Set,
  Exon,
  All.Pairwise,
  Trim,
  Res,
  EVS.rm,
  Missing,
  Cores.Lim,
  Return,
  Output,
  Merge.Output,
  Verbose
)

Arguments

HLA	Logical indicating whether data is HLA class I/II genotyping data only.
Loci.Set	Input list defining which loci to use for analyses (combinations permitted).
Exon	Numeric Exon(s) for targeted amino acid analysis.
All.Pairwise	Logical indicating whether all pairwise loci should be analyzed in haplotype analysis.
Trim	Logical indicating if HLA alleles should be trimmed to a set resolution.
Res	Numeric setting what desired resolution to trim HLA alleles.
EVS.rm	Logical indicating if expression variant suffixes should be removed.
Missing	Numeric setting allowable missing data for running analysis (may use "ignore").
Cores.Lim	Integer setting the number of cores accessible to BIGDAWG (Windows limit is 1 core).
Return	Logical Should analysis results be returned as list.
Output	Logical Should analysis results be written to output directory.
Merge.Output	Logical Should analysis results be merged into a single file for easy access.
Verbose	Logical Should a summary of each analysis be displayed in console.

Note

This function is for internal use only.

BIGDAWG documentation built on Nov. 17, 2021, 5:08 p.m.