cci: Case-Control Odds ratio calculation and graphing

In BIGDAWG: Case-Control Analysis of Multi-Allelic Loci

Description

cci function port epicalc version 2.15.1.0 (Virasakdi Chongsuvivatwong, 2012)

Usage

cci(
  caseexp,
  controlex,
  casenonex,
  controlnonex,
  cctable = NULL,
  graph = TRUE,
  design = "cohort",
  main,
  xlab,
  ylab,
  xaxis,
  yaxis,
  alpha = 0.05,
  fisher.or = FALSE,
  exact.ci.or = TRUE,
  decimal = 2
)

Arguments

caseexp	Number of cases exposed
controlex	Number of controls exposed
casenonex	Number of cases not exosed
controlnonex	Number of controls not exposed
cctable	A 2-by-2 table. If specified, will supercede the outcome and exposure variables
graph	If TRUE (default), produces an odds ratio plot
design	Specification for graph; can be "case control","case-control", "cohort" or "prospective"
main	main title of the graph
xlab	label on X axis
ylab	label on Y axis
xaxis	two categories of exposure in graph
yaxis	two categories of outcome in graph
alpha	level of significance
fisher.or	whether odds ratio should be computed by the exact method
exact.ci.or	whether confidence limite of the odds ratio should be computed by the exact method
decimal	number of decimal places displayed

Note

This function is for internal BIGDAWG use only.

BIGDAWG documentation built on Nov. 17, 2021, 5:08 p.m.