API for BoolNet
Construction, Simulation and Analysis of Boolean Networks
| Global functions | |
|---|---|
| .internal.getTransitionTable | Source code |
| Gb | Source code |
| Gini | Source code |
| MathMLFromParseTree | Source code |
| adjustGeneNames | Source code |
| allcombn | Source code |
| attractorsToLaTeX | Man page |
| b | Source code |
| bin2dec | Source code |
| binarizeTimeSeries | Man page Source code |
| canonicalStateOrder | Source code |
| cellcycle | Man page |
| check.integer | Source code |
| checkNullPointer | Source code |
| chooseNetwork | Man page Source code |
| dec2bin | Source code |
| dzeta | Source code |
| edgeDetector | Source code |
| examplePBN | Man page |
| expandCountPredicate | Source code |
| fixGenes | Man page Source code |
| generateCanalyzing | Man page Source code |
| generateInteraction | Source code |
| generateNestedCanalyzing | Man page Source code |
| generateRandomNKNetwork | Man page Source code |
| generateRandomStartStates | Source code |
| generateState | Man page Source code |
| generateTimeSeries | Man page Source code |
| getAttractorSequence | Man page Source code |
| getAttractors | Man page |
| getBasinOfAttraction | Man page Source code |
| getDNF | Source code |
| getInputs | Source code |
| getInteractionString | Source code |
| getPathToAttractor | Man page Source code |
| getStateSummary | Man page Source code |
| getTransitionProbabilities | Man page Source code |
| getTransitionTable | Man page Source code |
| igf | Man page |
| indent | Source code |
| kullbackLeiblerDistance | Source code |
| listadapt | Source code |
| loadBioTapestry | Man page Source code |
| loadNetwork | Man page Source code |
| loadSBML | Man page Source code |
| markovSimulation | Man page Source code |
| matchNames | Source code |
| maxTimeDelay | Source code |
| parseAllGenes | Source code |
| parseAllLinks | Source code |
| parseBooleanFunction | Source code |
| parseGeneAttrs | Source code |
| parseMathML | Source code |
| parseSBMLFunctionTerms | Source code |
| parseSBMLSpecies | Source code |
| parseSBMLTransitions | Source code |
| perturbNetwork | Man page Source code |
| perturbTrajectories | Man page Source code |
| plotAttractors | Man page |
| plotNetworkWiring | Man page Source code |
| plotPBNTransitions | Man page Source code |
| plotSequence | Man page |
| plotStateGraph | Man page Source code |
| print.AttractorInfo | Man page Source code |
| print.BooleanNetwork | Man page Source code |
| print.BooleanNetworkCollection | Man page Source code |
| print.BooleanStateInfo | Man page Source code |
| print.MarkovSimulation | Man page Source code |
| print.ProbabilisticBooleanNetwork | Man page Source code |
| print.SymbolicBooleanNetwork | Source code |
| print.SymbolicSimulation | Man page Source code |
| print.TransitionTable | Man page Source code |
| printSynchronousAttractor | Source code |
| pval | Source code |
| qzeta | Source code |
| reconstructNetwork | Man page Source code |
| rzeta | Source code |
| saveNetwork | Man page Source code |
| scan | Source code |
| scanStatistic | Source code |
| sequenceToLaTeX | Man page Source code |
| sequenceToLaTeX.BooleanNetwork | Man page |
| sequenceToLaTeX.data.frame | Man page |
| simplifyNetwork | Man page Source code |
| simulateSymbolicModel | Man page Source code |
| stateTransition | Man page Source code |
| stringFromParseTree | Source code |
| symbolicToTruthTable | Man page Source code |
| testAttractorRobustness | Man page Source code |
| testIndegree | Man page Source code |
| testNetworkProperties | Man page Source code |
| testTransitionRobustness | Man page Source code |
| toPajek | Man page |
| toSBML | Man page Source code |
| trim | Source code |
| truthTableToSymbolic | Man page Source code |
| xmlFindNode | Source code |
| yeastTimeSeries | Man page |
