Files in BoolNet
Construction, Simulation and Analysis of Boolean Networks
MD5
NAMESPACE
DESCRIPTION
R/plotSequence.R
R/truthTableToSymbolic.R
R/loadNetwork.R
R/plotAttractors.R
R/getAttractors.R
R/plotNetworkWiring.R
R/edgeDetector.R
R/print.AttractorInfo.R
R/getTransitionProbabilities.R
R/perturbNetwork.R
R/generateRandomNKNetwork.R
R/zeta.R
R/toPajek.R
R/stateTransition.R
R/getAttractorSequence.R
R/scanStatistic.R
R/testNetworkProperties.R
R/print.SymbolicBooleanNetwork.R
R/parseBooleanFunction.R
R/loadBioTapestry.R
R/print.MarkovSimulation.R
R/toSBML.R
R/perturbTrajectories.R
R/getStateSummary.R
R/print.SymbolicSimulation.R
R/plotPBNTransitions.R
R/print.BooleanNetwork.R
R/sequenceToLaTeX.R
R/simplifyNetwork.R
R/print.BooleanStateInfo.R
R/loadSBML.R
R/saveNetwork.R
R/getPathToAttractor.R
R/getTransitionTable.R
R/reconstructNetwork.R
R/markovSimulation.R
R/chooseNetwork.R
R/print.TransitionTable.R
R/symbolicToTruthTable.R
R/binarizeTimeSeries.R
R/print.ProbabilisticBooleanNetwork.R
R/helpers.R
R/simulateSymbolicModel.R
R/fixGenes.R
R/attractorsToLaTeX.R
R/getBasinOfAttraction.R
R/plotStateGraph.R
R/generateRandomStartStates.R
R/generateState.R
R/generateTimeSeries.R
src/random.h
src/Makevars.win
src/reconstruct_network.c
src/symbolic_network.c
src/common.h
src/attractor_search_interface.c
src/sat_search.c
src/symbolic_network.h
src/picosat.h
src/attractor_info.c
src/statespace_search.c
src/init.c
src/statespace_search.h
src/picosat.c
src/attractor_info.h
src/boolean_network.h
src/common.c
src/sat_search.h
src/uthash.h
src/probabilistic_boolean_network.c
src/symbolic_simulator.c
inst/NEWS.Rd
inst/CITATION
inst/doc/cellcycle.txt
inst/doc/BoolNet_package_vignette.R
inst/doc/example.btp
inst/doc/BoolNet_package_vignette.Snw
inst/doc/BoolNet_package_vignette.pdf
build/vignette.rds
vignettes/pajek.png
vignettes/BoolNet_package_vignette.Snw
vignettes/biotap_model.png
vignettes/basinsize.pdf
vignettes/wiring1.pdf
vignettes/transition_robustness.pdf
vignettes/attractor3.pdf
vignettes/attractor1.pdf
vignettes/biotap_logic.png
vignettes/BoolNet_package_vignette.Snw.tex
vignettes/stategraph2.pdf
vignettes/attractor2.pdf
vignettes/wiring_biotap.pdf
vignettes/pbntransitions.pdf
vignettes/indegree.pdf
vignettes/wiring2.pdf
vignettes/attractor_robustness.pdf
vignettes/piecewisestategraph.pdf
vignettes/sequence.pdf
vignettes/indegree_kl.pdf
vignettes/sequence_igf.pdf
vignettes/biotap_sim_properties.png
vignettes/biotap_initval.png
vignettes/BoolNet_package_vignette.bib
vignettes/stategraph1.pdf
data/yeastTimeSeries.rda
data/examplePBN.rda
data/cellcycle.rda
data/igf.rda
man/plotPBNTransitions.Rd
man/print.ProbabilisticBooleanNetwork.Rd
man/perturbTrajectories.Rd
man/markovSimulation.Rd
man/sequenceToLaTeX.Rd
man/loadSBML.Rd
man/generateTimeSeries.Rd
man/toSBML.Rd
man/print.AttractorInfo.Rd
man/truthTableToSymbolic.Rd
man/toPajek.Rd
man/loadBioTapestry.Rd
man/getTransitionTable.Rd
man/reconstructNetwork.Rd
man/chooseNetwork.Rd
man/generationFunctions.Rd
man/stateTransition.Rd
man/print.SymbolicSimulation.Rd
man/plotStateGraph.Rd
man/plotAttractors.Rd
man/simplifyNetwork.Rd
man/getAttractors.Rd
man/print.BooleanNetwork.Rd
man/yeastTimeSeries.Rd
man/plotSequence.Rd
man/examplePBN.Rd
man/print.TransitionTable.Rd
man/plotNetworkWiring.Rd
man/testNetworkProperties.Rd
man/symbolicToTruthTable.Rd
man/print.MarkovSimulation.Rd
man/loadNetwork.Rd
man/simulateSymbolicModel.Rd
man/saveNetwork.Rd
man/getBasinOfAttraction.Rd
man/binarizeTimeSeries.Rd
man/getPathToAttractor.Rd
man/attractorsToLaTeX.Rd
man/fixGenes.Rd
man/generateRandomNKNetwork.Rd
man/perturbNetwork.Rd
man/igf.Rd
man/cellcycle.Rd
man/getTransitionProbabilities.Rd
man/getAttractorSequence.Rd
man/generateState.Rd
man/getStateSummary.Rd
