Files in CB2
CRISPR Pooled Screen Analysis using Beta-Binomial Test
MD5
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/data.R
R/helpers.R
R/utils.R
src/Makevars.win
src/Makevars
src/RcppExports.cpp
src/CB2.cpp
src/AdaptiveHash.h
inst/doc/cb2-input-handling.R
inst/doc/cb2-tutorial.html
inst/doc/cb2-tutorial.R
inst/doc/cb2-input-handling.Rmd
inst/doc/cb2-tutorial.Rmd
inst/doc/cb2-input-handling.html
inst/extdata/toydata/Base2.fastq
inst/extdata/toydata/small_sample.fasta
inst/extdata/toydata/Low1.fastq
inst/extdata/toydata/Low2.fastq
inst/extdata/toydata/Base1.fastq
inst/extdata/toydata/High2.fastq
inst/extdata/toydata/sg2seq.tsv
inst/extdata/toydata/sg2gene.csv
inst/extdata/toydata/High1.fastq
inst/extdata/toydata/small_sample_dup.fasta
inst/extdata/toydata/gzipped/Low2.fastq.gz
inst/extdata/toydata/gzipped/Base2.fastq.gz
inst/extdata/toydata/gzipped/Low1.fastq.gz
inst/extdata/toydata/gzipped/Base1.fastq.gz
inst/extdata/toydata/gzipped/High1.fastq.gz
inst/extdata/toydata/gzipped/High2.fastq.gz
build/vignette.rds
tests/testthat.R
tests/testthat/test.toydata.R
vignettes/references.bib
vignettes/cb2-input-handling.Rmd
vignettes/cb2-tutorial.Rmd
data/Sanson_CRISPRn_A375.rda
data/Evers_CRISPRn_RT112.rda
man/Sanson_CRISPRn_A375.Rd
man/plot_corr_heatmap.Rd
man/measure_sgrna_stats.Rd
man/plot_dotplot.Rd
man/get_CPM.Rd
man/fit_ab.Rd
man/measure_gene_stats.Rd
man/rep_row.Rd
man/plot_count_distribution.Rd
man/Evers_CRISPRn_RT112.Rd
man/quant.Rd
man/run_estimation.Rd
man/run_sgrna_quant.Rd
man/calc_mappability.Rd
man/plot_PCA.Rd
man/join_count_and_design.Rd
man/figures/hexsticker.png
