Man pages for CB2
CRISPR Pooled Screen Analysis using Beta-Binomial Test

calc_mappabilityA function to calculate the mappabilities of each NGS sample.
Evers_CRISPRn_RT112A benchmark CRISPRn pooled screen data from Evers et al.
fit_abA C++ function to perform a parameter estimation for the...
get_CPMA function to normalize sgRNA read counts.
join_count_and_designA function to join a count table and a design table.
measure_gene_statsA function to perform gene-level test using a sgRNA-level...
plot_corr_heatmapA function to show a heatmap sgRNA-level corrleations of the...
plot_count_distributionA function to plot read count distribution.
plot_dotplotA function to visualize dot plots for a gene.
plot_PCAA function to plot the first two principal components of...
quantA C++ function to quantify sgRNA abundance from NGS samples.
run_estimationA function to perform a statistical test at a sgRNA-level
run_sgrna_quantA function to run a sgRNA quantification algorithm from NGS...
Sanson_CRISPRn_A375A benchmark CRISPRn pooled screen data from Sanson et al.
CB2 documentation built on May 17, 2019, 1 a.m.