Man pages for CB2
CRISPR Pooled Screen Analysis using Beta-Binomial Test
| calc_mappability | A function to calculate the mappabilities of each NGS sample. |
| Evers_CRISPRn_RT112 | A benchmark CRISPRn pooled screen data from Evers et al. |
| fit_ab | A C++ function to perform a parameter estimation for the... |
| get_CPM | A function to normalize sgRNA read counts. |
| join_count_and_design | A function to join a count table and a design table. |
| measure_gene_stats | A function to perform gene-level test using a sgRNA-level... |
| measure_sgrna_stats | A function to perform a statistical test at a sgRNA-level |
| plot_corr_heatmap | A function to show a heatmap sgRNA-level corrleations of the... |
| plot_count_distribution | A function to plot read count distribution. |
| plot_dotplot | A function to visualize dot plots for a gene. |
| plot_PCA | A function to plot the first two principal components of... |
| quant | A C++ function to quantify sgRNA abundance from NGS samples. |
| run_estimation | A function to perform a statistical test at a sgRNA-level,... |
| run_sgrna_quant | A function to run a sgRNA quantification algorithm from NGS... |
| Sanson_CRISPRn_A375 | A benchmark CRISPRn pooled screen data from Sanson et al. |
