plot_count_distribution: A function to plot read count distribution.
In CB2: CRISPR Pooled Screen Analysis using Beta-Binomial Test
Description
Usage
Arguments
Value
Examples
Description
A function to plot read count distribution.
Usage
1
plot_count_distribution(sgcount, df_design, add_dots = FALSE)
Arguments
sgcount
The input matrix contains read counts of sgRNAs for each sample.
df_design
The table contains a study design.
add_dots
The function will display dots of sgRNA counts if it is set to 'TRUE'.
Value
A ggplot2 object contains a read count distribution plot for 'sgcount'.
Examples
1
2
3
4
library(CB2)
data(Evers_CRISPRn_RT112)
cpm <- get_CPM(Evers_CRISPRn_RT112$count)
plot_count_distribution(cpm, Evers_CRISPRn_RT112$design)
CB2 documentation built on July 24, 2020, 5:08 p.m.
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Description Usage Arguments Value Examples
Description
A function to plot read count distribution.
Usage
1 | plot_count_distribution(sgcount, df_design, add_dots = FALSE)
|
Arguments
sgcount |
The input matrix contains read counts of sgRNAs for each sample. |
df_design |
The table contains a study design. |
add_dots |
The function will display dots of sgRNA counts if it is set to 'TRUE'. |
Value
A ggplot2 object contains a read count distribution plot for 'sgcount'.
Examples
1 2 3 4 | library(CB2)
data(Evers_CRISPRn_RT112)
cpm <- get_CPM(Evers_CRISPRn_RT112$count)
plot_count_distribution(cpm, Evers_CRISPRn_RT112$design)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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