get_CPM: A function to normalize sgRNA read counts.
In CB2: CRISPR Pooled Screen Analysis using Beta-Binomial Test
get_CPM R Documentation
A function to normalize sgRNA read counts.
Description
A function to normalize sgRNA read counts.
Usage
get_CPM(sgcount)
Arguments
sgcount
The input table contains read counts of sgRNAs for each sample
A function to calculate the CPM (Counts Per Million) (required)
Value
a normalized CPM table will be returned
Examples
library(CB2)
data(Evers_CRISPRn_RT112)
get_CPM(Evers_CRISPRn_RT112$count)
CB2 documentation built on Nov. 5, 2025, 6:49 p.m.
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| get_CPM | R Documentation |
A function to normalize sgRNA read counts.
Description
A function to normalize sgRNA read counts.
Usage
get_CPM(sgcount)
Arguments
sgcount |
The input table contains read counts of sgRNAs for each sample A function to calculate the CPM (Counts Per Million) (required) |
Value
a normalized CPM table will be returned
Examples
library(CB2)
data(Evers_CRISPRn_RT112)
get_CPM(Evers_CRISPRn_RT112$count)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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