Evers_CRISPRn_RT112: A benchmark CRISPRn pooled screen data from Evers et al.

Description Usage Format Source

Description

A benchmark CRISPRn pooled screen data from Evers et al.

Usage

1

Format

The data object is a list and contains below information:

count

The count matrix from Evers et al.'s paper and contains the CRISPRn screening result using RT112 cell-line. It contains three different replicates for T0 (before) and contains different three replicates for T1 (after).

egenes

The list of 46 essential genes used in Evers et al.'s study.

ngenes

The list of 47 non-essential genes used in Evers et al.'s study.

design

The data.frame contains study design.

sg_stat

The data.frame contains the sgRNA-level statistics.

gene_stat

The data.frame contains the gene-level statistics.

Source

https://www.ncbi.nlm.nih.gov/pubmed/27111720


CB2 documentation built on May 17, 2019, 1 a.m.