plot_dotplot: A function to visualize dot plots for a gene.

In CB2: CRISPR Pooled Screen Analysis using Beta-Binomial Test

Description

A function to visualize dot plots for a gene.

Usage

plot_dotplot(sgcount, df_design, gene, ge_id = NULL, sg_id = NULL)

Arguments

sgcount	The input matrix contains read counts of sgRNAs for each sample.
df_design	The table contains a study design.
gene	The gene to be shown.
ge_id	A name of the column contains gene names.
sg_id	A name of the column contains sgRNA IDs.

Value

A ggplot2 object contains dot plots of sgRNA read counts for a gene.

Examples

library(CB2)
data(Evers_CRISPRn_RT112)
plot_dotplot(get_CPM(Evers_CRISPRn_RT112$count), Evers_CRISPRn_RT112$design, "RPS7")

CB2 documentation built on July 24, 2020, 5:08 p.m.