plot_corr_heatmap: A function to show a heatmap sgRNA-level corrleations of the...
In CB2: CRISPR Pooled Screen Analysis using Beta-Binomial Test
Description
Usage
Arguments
Value
Description
A function to show a heatmap sgRNA-level corrleations of the NGS samples.
Usage
1
plot_corr_heatmap(sgcount, df_design, cor_method = "pearson")
Arguments
sgcount
The input matrix contains read counts of sgRNAs for each sample.
df_design
The table contains a study design.
cor_method
A string parameter of the correlation measure. One of the three - "pearson", "kendall", or "spearman" will be the string.
Value
A pheatmap object contains the correlation heatmap
library(CB2)
data(Evers_CRISPRn_RT112)
plot_corr_heatmap(Evers_CRISPRn_RT112$count, Evers_CRISPRn_RT112$design)
CB2 documentation built on July 24, 2020, 5:08 p.m.
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Description Usage Arguments Value
Description
A function to show a heatmap sgRNA-level corrleations of the NGS samples.
Usage
1 | plot_corr_heatmap(sgcount, df_design, cor_method = "pearson")
|
Arguments
sgcount |
The input matrix contains read counts of sgRNAs for each sample. |
df_design |
The table contains a study design. |
cor_method |
A string parameter of the correlation measure. One of the three - "pearson", "kendall", or "spearman" will be the string. |
Value
A pheatmap object contains the correlation heatmap
library(CB2) data(Evers_CRISPRn_RT112) plot_corr_heatmap(Evers_CRISPRn_RT112$count, Evers_CRISPRn_RT112$design)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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