getCoord: Computes coordinates of a canonical point
In CHAT: Clonal Heterogeneity Analysis Tool
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function calculates the x and y coordinates of a canonical point on BAF-LRR plot.
Usage
1
getCoord(p, x0, y0, nn, nb, nt)
Arguments
p
numeric, proportion of aneuploid genome for a DNA segment
x0
numeric, x coordinate for the Origin Cluster
y0
numeric, y coordinate for the Origin Cluster
nn
integer, ploidy indicator. 1, diploid; 2, tetraploid; 3, hexaploid
nb
integer, number of minor alleles
nt
integer, number of total alleles
Value
A list of x and y coordinates.
Author(s)
Bo Li
Examples
1
2
3
4
5
x0=0.05
y0=0.2
p=0.8
## Calculate the coordinates for copy-neutral-LOH segment
getCoord(p,x0,y0,1,0,2)
CHAT documentation built on May 29, 2017, 10:32 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
This function calculates the x and y coordinates of a canonical point on BAF-LRR plot.
Usage
1 | getCoord(p, x0, y0, nn, nb, nt)
|
Arguments
p |
numeric, proportion of aneuploid genome for a DNA segment |
x0 |
numeric, x coordinate for the Origin Cluster |
y0 |
numeric, y coordinate for the Origin Cluster |
nn |
integer, ploidy indicator. 1, diploid; 2, tetraploid; 3, hexaploid |
nb |
integer, number of minor alleles |
nt |
integer, number of total alleles |
Value
A list of x and y coordinates.
Author(s)
Bo Li
Examples
1 2 3 4 5 | x0=0.05
y0=0.2
p=0.8
## Calculate the coordinates for copy-neutral-LOH segment
getCoord(p,x0,y0,1,0,2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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