getDiploidOrigin: Estimate diploid origin in higher ploidy samples
In CHAT: Clonal Heterogeneity Analysis Tool
Description
Usage
Arguments
Value
Author(s)
View source: R/getDiploidOrigin.R
Description
In higher ploidy samples, the Origin Cluster estimated by getOrigin() usually represents the fraction of genome with balanced gains. This function estimates the position of the unchanged diploid genome on BAF-LRR plot.
Usage
1
getDiploidOrigin(dd, oo, para)
Arguments
dd
numeric matrix, as returned from getSegPurity()
oo
list, returned from getOrigin()
para
list, returned from getPara.sAGP()
Value
a new list for diploid genome fraction, in the same format as input oo.
Author(s)
Bo Li
CHAT documentation built on May 29, 2017, 10:32 p.m.
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Description Usage Arguments Value Author(s)
View source: R/getDiploidOrigin.R
Description
In higher ploidy samples, the Origin Cluster estimated by getOrigin() usually represents the fraction of genome with balanced gains. This function estimates the position of the unchanged diploid genome on BAF-LRR plot.
Usage
1 | getDiploidOrigin(dd, oo, para)
|
Arguments
dd |
numeric matrix, as returned from getSegPurity() |
oo |
list, returned from getOrigin() |
para |
list, returned from getPara.sAGP() |
Value
a new list for diploid genome fraction, in the same format as input oo.
Author(s)
Bo Li
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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