getDiploidOrigin: Estimate diploid origin in higher ploidy samples

Description Usage Arguments Value Author(s)

Description

In higher ploidy samples, the Origin Cluster estimated by getOrigin() usually represents the fraction of genome with balanced gains. This function estimates the position of the unchanged diploid genome on BAF-LRR plot.

Usage

1
getDiploidOrigin(dd, oo, para)

Arguments

dd

numeric matrix, as returned from getSegPurity()

oo

list, returned from getOrigin()

para

list, returned from getPara.sAGP()

Value

a new list for diploid genome fraction, in the same format as input oo.

Author(s)

Bo Li



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