getCanonicalLines: Regression lines on canonical points with same number of...
In CHAT: Clonal Heterogeneity Analysis Tool
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/getCanonicalLines.R
Description
This function performs linear regression on canonical points with same number of minor alleles. This is an approximation of the real data grid to achieve faster computational speed.
Usage
1
getCanonicalLines(oo, p, type = 1, para)
Arguments
oo
Origin Cluster, returned by getOrigin()
p
numeric, AGP value. see getGrid() for details.
type
integer, ploidy indicator. 1, diploid; 2, tetraploid; 3, hexaploid
para
list, parameters returned from getPara()
Value
A list including the following elements:
b
slope of the line
k
intercept of the line
oo
Origin Cluster
Author(s)
Bo Li
Examples
1
2
3
4
5
oo=NULL
oo$x0=0.02
oo$y0=0.1
oo$list=c()
cali=getCanonicalLines(oo,0.8,para=getPara())
CHAT documentation built on May 29, 2017, 10:32 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/getCanonicalLines.R
Description
This function performs linear regression on canonical points with same number of minor alleles. This is an approximation of the real data grid to achieve faster computational speed.
Usage
1 | getCanonicalLines(oo, p, type = 1, para)
|
Arguments
oo |
Origin Cluster, returned by |
p |
numeric, AGP value. see |
type |
integer, ploidy indicator. 1, diploid; 2, tetraploid; 3, hexaploid |
para |
list, parameters returned from |
Value
A list including the following elements:
b |
slope of the line |
k |
intercept of the line |
oo |
Origin Cluster |
Author(s)
Bo Li
Examples
1 2 3 4 5 | oo=NULL
oo$x0=0.02
oo$y0=0.1
oo$list=c()
cali=getCanonicalLines(oo,0.8,para=getPara())
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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