choose_lambda | Choose the most appropriate weight parameter lambda |
cond.fyx | Compute the ECF-statistics measuring the differential... |
COSINE-package | COndition SpecIfic subNEtwork identification |
DataSimu | Simulation of the six datasets and the case dataset |
diff_gen | Calculate the F-statistics and ECF-statistics |
diff_gen_for3 | Generate the F-statistics and ECF-statistics for the... |
diff_gen_PPI | Generate the scaled node score and scaled edge score for... |
f.test | To get the F-statistics for each gene |
GA_search | Use genetic algorithm to search for the globally optimal... |
GA_search_PPI | Run genetic algorithm to search for the PPI sub-network |
get_components_PPI | Get all the components (connected clusters) of the... |
get_quantiles | Get the five quantiles of the weight parameter lambda |
get_quantiles_PPI | Get the five quantile values of lambda for analysis of gene... |
PPI | The protein protein interaction network data |
random_network_sampling_PPI | To sample random sub-network from the PPI data |
scaled_edge_score | The scaled ECF statistics of all the edges |
scaled_node_score | The scaled ECF-statistics of all the edges |
Score_adjust_PPI | To adjust the score of the selected PPI sub-network using... |
score_scaling | To get the normalzied F-statistics and ECF-statistics |
set1_GA | Result of genetic algorithm search for simulated data set1 |
set1_scaled_diff | The standardized F-statistics and ECF-statistics for the... |
set1_unscaled_diff | The unstandardized F-statistics and ECF-statistics of... |
simulated_data | The simulated data sets used in the paper |
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