diff_gen_PPI: Generate the scaled node score and scaled edge score for...
In COSINE: COndition SpecIfic sub-NEtwork

Description Usage Arguments Value Author(s) Examples

Compute the F-statistic and ECF-statistic and then standardize them

1	diff_gen_PPI(data1, data2, PPI)

`data1`	The first gene expression dataset(with rows corresponding to samples)
`data2`	The second gene expression dataset
`PPI`	A matrix with two columns containing the protein interaction pairs

A list containing:

`scaled_node_score`	The standardized F-statistic measuring the differential expression of each gene
`scaled_edge_score`	The standardized ECF-statistic measuring the differential correlation of each gene pair

Haisu Ma

data(simulated_data)
data(PPI)
data1 <- simulated_data[[1]]
data2 <- simulated_data[[7]]
colnames(data1)<-colnames(data2)<-as.character(1:500)
test <- diff_gen_PPI(data1[,1:20],data2[,1:20],PPI)