get_components_PPI: Get all the components (connected clusters) of the...

Description Usage Arguments Value Author(s) Examples

View source: R/get_components_PPI.R

Description

Map the edges in the selected sub-network to the background PPI network and get all the clusters with size larger than the minimumset by the user

Usage

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get_components_PPI(gene_names, vector, PPI, minsize)

Arguments

gene_names

The gene names of all the nodes

vector

A binary vector indicating whether each node is selected or not

PPI

A two column matrix including the protein interaction data

minsize

The minimal size of clusters

Value

A list with each element corresponding to one cluster in the selected sub-network

Author(s)

Haisu Ma

Examples

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COSINE documentation built on May 29, 2017, 1:40 p.m.

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