get_components_PPI: Get all the components (connected clusters) of the...
In COSINE: COndition SpecIfic sub-NEtwork

Description Usage Arguments Value Author(s) Examples

Map the edges in the selected sub-network to the background PPI network and get all the clusters with size larger than the minimumset by the user

1	get_components_PPI(gene_names, vector, PPI, minsize)

`gene_names`	The gene names of all the nodes
`vector`	A binary vector indicating whether each node is selected or not
`PPI`	A two column matrix including the protein interaction data
`minsize`	The minimal size of clusters

A list with each element corresponding to one cluster in the selected sub-network

Haisu Ma

data(scaled_node_score)
data(scaled_edge_score)
data(PPI)
gene_names<-names(scaled_node_score)
vector<-rep(0,length(scaled_node_score))
vector[sample(1:length(scaled_node_score),length(scaled_node_score)/3)]<-1
components<-get_components_PPI(gene_names,vector,PPI,minsize=3)