Get all the components (connected clusters) of the sub-network

Description

Map the edges in the selected sub-network to the background PPI network and get all the clusters with size larger than the minimumset by the user

Usage

1
get_components_PPI(gene_names, vector, PPI, minsize)

Arguments

gene_names

The gene names of all the nodes

vector

A binary vector indicating whether each node is selected or not

PPI

A two column matrix including the protein interaction data

minsize

The minimal size of clusters

Value

A list with each element corresponding to one cluster in the selected sub-network

Author(s)

Haisu Ma

Examples

1
2
3
4
5
6
7

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.