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**COSINE**: COndition SpecIfic sub-NEtwork**PPI**: The protein protein interaction network data

# The protein protein interaction network data

### Description

A two column matrix containing with each row containing the names of the interacting gene pairs

### Usage

1 |

### Format

The format is: int [1:1000, 1:2] 184 270 85 386 11 302 4 42 173 233 ...

### Examples

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- choose_lambda: Choose the most appropriate weight parameter lambda
- choose_lambda: Choose the most appropriate weight parameter lambda
- cond.fyx: Compute the ECF-statistics measuring the differential...
- cond.fyx: Compute the ECF-statistics measuring the differential...
- COSINE-package: COndition SpecIfic subNEtwork identification
- COSINE-package: COndition SpecIfic subNEtwork identification
- DataSimu: Simulation of the six datasets and the case dataset
- DataSimu: Simulation of the six datasets and the case dataset
- diff_gen: Calculate the F-statistics and ECF-statistics
- diff_gen: Calculate the F-statistics and ECF-statistics
- diff_gen_for3: Generate the F-statistics and ECF-statistics for the...
- diff_gen_for3: Generate the F-statistics and ECF-statistics for the...
- diff_gen_PPI: Generate the scaled node score and scaled edge score for...
- diff_gen_PPI: Generate the scaled node score and scaled edge score for...
- f.test: To get the F-statistics for each gene
- f.test: To get the F-statistics for each gene
- GA_search: Use genetic algorithm to search for the globally optimal...
- GA_search: Use genetic algorithm to search for the globally optimal...
- GA_search_PPI: Run genetic algorithm to search for the PPI sub-network
- GA_search_PPI: Run genetic algorithm to search for the PPI sub-network
- get_components_PPI: Get all the components (connected clusters) of the...
- get_components_PPI: Get all the components (connected clusters) of the...
- get_quantiles: Get the five quantiles of the weight parameter lambda
- get_quantiles: Get the five quantiles of the weight parameter lambda
- get_quantiles_PPI: Get the five quantile values of lambda for analysis of gene...
- get_quantiles_PPI: Get the five quantile values of lambda for analysis of gene...
- PPI: The protein protein interaction network data
- PPI: The protein protein interaction network data
- random_network_sampling_PPI: To sample random sub-network from the PPI data
- random_network_sampling_PPI: To sample random sub-network from the PPI data
- scaled_edge_score: The scaled ECF statistics of all the edges
- scaled_edge_score: The scaled ECF statistics of all the edges
- scaled_node_score: The scaled ECF-statistics of all the edges
- scaled_node_score: The scaled ECF-statistics of all the edges
- Score_adjust_PPI: To adjust the score of the selected PPI sub-network using...
- Score_adjust_PPI: To adjust the score of the selected PPI sub-network using...
- score_scaling: To get the normalzied F-statistics and ECF-statistics
- score_scaling: To get the normalzied F-statistics and ECF-statistics
- set1_GA: Result of genetic algorithm search for simulated data set1
- set1_GA: Result of genetic algorithm search for simulated data set1
- set1_scaled_diff: The standardized F-statistics and ECF-statistics for the...
- set1_scaled_diff: The standardized F-statistics and ECF-statistics for the...
- set1_unscaled_diff: The unstandardized F-statistics and ECF-statistics of...
- set1_unscaled_diff: The unstandardized F-statistics and ECF-statistics of...
- simulated_data: The simulated data sets used in the paper
- simulated_data: The simulated data sets used in the paper