Man pages for Certara.RsNLME
Pharmacometric Modeling
| acceptAllEffects | Accepts all estimates for fixed effects, Sigma, and random... |
| addADDL | Adds ADDL extra column definition to model object |
| addCovariate | Add covariate to model object |
| addDoseCycle | Adds a dosing cycle to model |
| addExtraDef | Adds user defined extra column/table definitions to column... |
| addInfusion | Change existing dosing compartment to infusion |
| addLabel | Add levels and labels to categorical or occasion covariate |
| addMDV | Adds MDV extra column definition to model object |
| addReset | Adds reset instructions to the model |
| addSecondary | Adds a secondary parameter to model definition |
| addSteadyState | Adds Steady State extra column definition to model object |
| addTablesToColumnMapping | Add tables to the mapping |
| addToErrorModel | Add to the NLME Error model |
| bootstrap | Executes an NLME Bootstrap |
| BootstrapParams-class | Represents parameters for a bootstrap run |
| cancelJob | Generic function for cancelling a job |
| checkHostParams | Check Host Parameters |
| colMapping | Add column mappings |
| copyModel | Copy model object to iterate over base model |
| CovariateEffectModel-class | NLME covariate effects model object class |
| covariateEffect-set | Sets style for a covariate/variable |
| covariateModel | Creates set of covariate effects |
| covariateNames | Return covariate names |
| covariatePartsString | Creates string from each covariate attribute |
| create_model_from_metamodel | Use to create model object from parsed metamodel |
| createModelInfo | Parse the model and get the list of terms |
| dataMapping | Initialize input data for PK/PD model |
| deleteSecondary | Deletes a secondary parameter from the model |
| doseNames | Return dose names |
| DosePoint-class | Defines a dosepoint for a compartment |
| editModel | Directly edit PML text in model object |
| emaxmodel | Create an Emax or Imax model |
| emaxmodel_MappingParameters | Emax model mapping parameters |
| engineParams | Specify engine parameters for model execution |
| extract_mmdl | extract files used for powershell script |
| ExtraDoseDataType-class | Creates an extra dose parameter |
| ExtraDoseItem-class | Defines an extra dose point |
| extraDoseLines | Return extra dose lines |
| extraDoseNames | Return extra dose names |
| fitmodel | Executes an NLME simple estimation |
| fixedEffect | Specifies the initial values, lower bounds, upper bounds, and... |
| generatePML | Generates PML statements based on the current model |
| generatePMLModel | Generates PML statements based on the current model |
| getRandomEffectNames | Return random effect names in model |
| getThetas | Return theta names and values |
| hostParams | Initialize for NlmeParallelHost |
| initFixedEffects | Display/Set initial estimates for fixed effects |
| initializeRandomEffectsBlock | Initializes random effects structure from structural... |
| linearmodel | Create linear model |
| linearmodel_MappingParameters | Linear model mapping parameters |
| listCovariateEffectNames | Lists covariate effect names in the model |
| loadModel | Load model.rda file |
| modelVariableNames | Return model variable names |
| NlmeColumnMap-class | Class represents map between a model variable and a dataset... |
| NlmeColumnMapping-class | Class represents mapping list between model variables and... |
| NlmeCovariateParameter-class | NlmeCovariateParameter |
| NlmeCovarItem-class | Class represents an NLME Covariate parameter |
| NlmeDataset-class | NLME dataset object |
| NlmeDoseMapping-class | Class represents mapping list between model variables and... |
| NlmeEmaxParameters-class | Class represents an NLME/PML Emax model parameters |
| NlmeEngineExtraParams-class | NlmeEngineExtraParams : Defines all extra engine parameters |
| NlmeErrorModel-class | Class represents an NLME/PML error model |
| NlmeIndirectParameters-class | Class represents an NLME/PML Indirect PD model parameters |
| NlmeJobStatus | Reads progress file and returns the status of a job |
| NlmeModelAbsorption-class | Class represents an NLME/PML model absorption |
| NlmeModelParameterization-class | Class represents an NLME/PML model parameterization |
| NlmeModelType-class | Class represents an NLME/PML model type |
| NlmeObservationVar-class | Class initializer for NlmeObservationVar-class |
| NlmeParallelHost-class | Class initializer for NlmeParallelHost |
| NlmeParallelMethod-class | Class initializer for NlmeParallelMethod |
| NlmeParamsMapping-class | Class represents mapping list between model variables and... |
| NlmePkParameters-class | Class represents an NLME/PML PK model parameters |
| NlmePmlModel-class | Class initializaer for NlmePmlModel object |
| NlmeRandomEffectBlock | Random effect block definition |
| NlmeRandomEffectValues-class | Random effect values matrix |
| NlmeRandParamsMapping-class | Class represents mapping list between model variables and... |
| NlmeRemoteExecutor-class | Class initializer for NlmeRemoteExecutor |
| NlmeResidualEffect-class | Class represents an NLME/PML residual error model |
| NlmeScenario-class | Class initializer for NlmeScenario |
| NlmeSimTableDef-class | Class initializer for NlmeSimTableDef |
| NlmeSimulationParams-class | Class initializer for NlmeSimulationParams |
| NlmeStrucParamStyle | Class represents style of structural parameter |
| NlmeStructuralParameter-class | Class represents an NLME structural parameter |
| NlmeTableDef-class | Class initializer for NlmeTableDef |
| NlmeUserAuthentication-class | Class initializer for NlmeUserAuthentication |
| NlmeVpcParams-class | Arguments for VPC runs |
| observationNames | Get observation names |
| obtain_NLMELicense | Obtain NLME License |
| OneCpt_IVInfusionData | Pharmacokinetic dataset containing 100 subjects with single... |
| parse_NLMEHosts | Create NlmeParallelHost object from json file with host... |
| parsePMLColMap | Embed column definition info into the model |
| pkcovbqlData | Pharmacokinetic pediatric dataset containing 80 subjects with... |
| pkData | Pharmacokinetic dataset containing 16 subjects with single... |
| pkemaxmodel | Create a PK/Emax or PK/Imax model |
| pkindirectmodel | Create a PK/Indirect response model |
| pkindirectmodel_MappingParameters | PK Indirect model mapping parameters |
| pklinearmodel | Create PK linear model |
| pkmodel | Creates a PK model |
| pkmodel_MappingParameters | PK model mapping parameters |
| pkpdData | Pharmacokinetic/Pharmacodynamic dataset containing 200... |
| print.NlmeEngineExtraParams | Print generic for class NlmeEngineExtraParams |
| print.NlmeParallelHost | Print method for NlmeParallelHost class |
| print.NlmePmlModel | Print generic for class NlmePmlModel |
| print.SimpleNlmeJob | Print generic for class Simple.NlmeJob |
| ProfileParameters-class | Class initializer for ProfileParameters |
| profilePertubate | Executes an NLME profile perturbation |
| ProfileVar-class | NLME Profile variable |
| randomBlockStatement | Returns random block statement |
| randomEffect | Sets or updates the covariance matrix of random effects |
| randomOccasionalBlockStatement | Returns occasional random block statement |
| removeCovariate | Remove covariate from structural parameters in a model... |
| remove_NLMELicense | Remove NLME License |
| ResetColumnInfo-class | Class initializer for ResetColumnInfo |
| residualEffectNames | Return residual effect terms available in model |
| residualEffect-set | Sets residual effect attributes |
| residualError | Assign residual error model to model object |
| run_metamodel | Fit the NLME metamodel |
| RunProfilePertubation | Execute an NLME profile perturbation |
| saveModel | Save model object to .rda file |
| saveUpdatedMetamodel | workhorse for change_ThetasMmdlin RsNLME.ModelBuilder |
| SecondaryParameter-class | Class represents an NLME secondary parameter |
| secondaryParameterNames | Get secondary parameter names |
| shotgunSearch | Executes an NLME shotgun covariate search |
| simmodel | Executes an NLME simulation |
| SortColumns-class | Class initializer for SortColumns |
| sortfit | Executes an NLME simple estimation with sort keys and given... |
| StepwiseParams-class | Class initializer for NLME StepwiseParams |
| stepwiseSearch | Executes an NLME stepwise covariate search |
| structuralParameter | Set structural parameter in model object |
| structuralParameterNames | Get structural parameter names |
| structuralParam-set | Method to set structural parameter attributes |
| tableParams | Wrapper around NlmeTableDef/NlmeSimTableDef-classes... |
| textualmodel | Create a textual model object |
| updateErrorModel | Updates error model |
| vpcmodel | Perform visual predictive check for NLME models |
| writeDefaultFiles | Writes out data/column mapping and engine parameter files for... |
