Files in Covid19Wastewater

Prepare, Analyze, and Visualize Covid-19 Wastewater Data

README.md R/library--analysis_tools--time_offset--Offset_Analysis_Plot.R R/library--data_prep--calculated_tools--date_vector_difference.R R/package_data.R R/library--analysis_tools--DHS_methods--create_flag_count.R R/library--analysis_tools--DHS_methods--flag_functions.R R/library--analysis_tools--DHS_methods--classification_function.R R/library--data_prep--filter_tools--outlier_tools.R R/library--data_prep--filter_tools--make_quantile_function.R R/library--data_prep--smooth_tools--ts_trend_gen.R R/library--analysis_tools--lm_rand_forest--info.R R/Data_Description.R R/library--data_prep--filter_tools--sd_trend_outlier.R R/library--data_prep--calculated_tools--factor_vec_by_number_points.R R/library--data_prep--calculated_tools--build_analysis_DF.R R/library--analysis_tools--lm_rand_forest--formula_help.R R/Covid19WasteWater_package.R R/library--analysis_tools--DHS_methods--regression_algo.R R/library--analysis_tools--time_offset--Offset_Analysis.R R/library--analysis_tools--lm_rand_forest--use.R R/library--analysis_tools--lm_rand_forest--class_methods.R R/Covid19WasteWater.R inst/doc/Intercepter_data_case.R inst/doc/Aux_info_data.Rmd inst/doc/population_data.pdf inst/doc/Intercepter_data_case.pdf inst/doc/HFG_data_case.R inst/doc/calculated_info.Rmd inst/doc/linear_forest.Rmd inst/doc/linear_forest.R inst/doc/variant_data.R inst/doc/longitudinal_data_waste.Rmd inst/doc/HFG_data_case.pdf inst/doc/example_data.pdf inst/doc/longitudinal_data_waste.pdf inst/doc/smoothing.pdf inst/doc/longitudinal_data_case.Rmd inst/doc/longitudinal_data_case.pdf inst/doc/example_data.Rmd inst/doc/time_series_offset.pdf inst/doc/longitudinal_data_waste.R inst/doc/time_series_offset.R inst/doc/linear_forest.pdf inst/doc/variant_data.Rmd inst/doc/outliers.Rmd inst/doc/variant_data.pdf inst/doc/smoothing.Rmd inst/doc/outliers.R inst/doc/calculated_info.R inst/doc/HFG_data_waste.R inst/doc/longitudinal_data_case.R inst/doc/time_series_offset.Rmd inst/doc/HFG_data_waste.Rmd inst/doc/smoothing.R inst/doc/example_data.R inst/doc/outliers.pdf inst/doc/Aux_info_data.pdf inst/doc/Intercepter_data_case.Rmd inst/doc/population_data.R inst/doc/HFG_data_waste.pdf inst/doc/Aux_info_data.R inst/doc/HFG_data_case.Rmd inst/doc/population_data.Rmd inst/doc/calculated_info.pdf vignettes/Aux_info_data.Rmd vignettes/calculated_info.Rmd vignettes/linear_forest.Rmd vignettes/longitudinal_data_waste.Rmd vignettes/longitudinal_data_case.Rmd vignettes/example_data.Rmd vignettes/variant_data.Rmd vignettes/outliers.Rmd vignettes/smoothing.Rmd vignettes/time_series_offset.Rmd vignettes/HFG_data_waste.Rmd vignettes/Intercepter_data_case.Rmd vignettes/HFG_data_case.Rmd vignettes/population_data.Rmd man/runRegressionAnalysis.Rd man/classifyCaseRegression.Rd man/buildRegressionEstimateTable.Rd man/InterceptorCase_data.Rd man/classifyRegressionAnalysis.Rd man/gen_OOB_pred.Rd man/buildWasteAnalysisDF.Rd man/random_linear_forest.Rd man/OffsetDFMaker.Rd man/Aux_info_data.Rd man/predict-random_linear_forest-method.Rd man/makeQuantileColumns.Rd man/Covariants_data.Rd man/diffLookup.Rd man/buildCaseAnalysisDF.Rd man/flagOutliers.Rd man/Data_Description.Rd man/date_distance_calc.Rd man/createWasteFlags.Rd man/computeRankQuantiles.Rd man/VariantPlot.Rd man/DF_date_vector.Rd man/date_distance_remove.Rd man/regressionInnerLoop.Rd man/expand_formula.Rd man/random_linear_forest-class.Rd man/computeJumps.Rd man/heatmapcorfunc.Rd man/summary-random_linear_forest-method.Rd man/createCaseFlag.Rd man/sgolaySmoothMod.Rd man/Pop_data.Rd man/removeOutliers.Rd man/OffsetHeatmap.Rd man/uniqueVal.Rd man/Flag_From_Trend.Rd man/show-random_linear_forest-method.Rd man/nGuess.Rd man/gen_INCMSE.Rd man/countFlags.Rd man/HFGWaste_data.Rd man/expSmoothMod.Rd man/Example_data.Rd man/rankJumps.Rd man/date_distance_clamp.Rd man/WasteWater_data.Rd man/windowingQuantFunc.Rd man/HFGCase_data.Rd man/Case_data.Rd man/bagging.Rd man/OffsetDF_Plot.Rd man/classifyQuantileFlagRegression.Rd man/factorVecByNumPoints.Rd man/Covid19Wastewater.Rd man/loessSmoothMod.Rd man/OOB_MSE_num_trees.Rd man/factorVecByVec.Rd man/parameterGuess.Rd