cov.calc.gene: Calculate covariance structure for gene over pseudotimes and...
In DeLorean: Estimates Pseudotimes for Single Cell Expression Data

Calculate covariance structure for gene over pseudotimes and test inputs.

cov.calc.gene(dl, gene.idx, cov.fn = cov.matern.32,
  tau = tau.for.sample(dl), include.test = TRUE,
  psi = sampled.gene.param(dl, gene.idx, "psi"),
  omega = sampled.gene.param(dl, gene.idx, "omega"))

`dl`	de.lorean object
`gene.idx`	Gene index
`cov.fn`	Covariance function (defaults to cov.matern.32)
`tau`	The pseudotimes to use
`include.test`	Also include the pseudotimes for the test inputs
`psi`	Temporal variation
`omega`	Noise