find.smooth.tau: Find best order of the samples assuming some smooth GP prior...

In DeLorean: Estimates Pseudotimes for Single Cell Expression Data

Description

Find best order of the samples assuming some smooth GP prior on the expression profiles over this ordering.

Usage

find.smooth.tau(dl, psi = exp(dl$hyper$mu_psi),
  omega = exp(dl$hyper$mu_omega), num.cores = default.num.cores(),
  num.tau.to.try = num.cores, num.tau.to.keep = num.cores,
  method = "metropolis", ...)

Arguments

dl	de.lorean object
psi	Temporal variation
omega	Noise
num.cores	Number of cores to run on. Defaults to default.num.cores()
num.tau.to.try	How many initialisations to try
num.tau.to.keep	How many initialisations to keep
method	Method to use "maximise" or "metropolis"
...	Extra arguments to method

DeLorean documentation built on May 2, 2019, 9:24 a.m.