readUserSample: Import user-supplied sample data for EGRET analysis

In EGRET: Exploration and Graphics for RivEr Trends

Import user-supplied sample data for EGRET analysis

Description

Imports data from a user-supplied file, and converts it to a Sample data frame (including summing multiple constituents), appropriate for EGRET analysis. First column is date, second is remark code, and third is value. If multiple constituents are to be combined with interval censoring, additional pairs of columns can be inserted, each pair starting with remark code (specifically looking for <), followed by the values. If the date format is not automatically detected, the format can be specified using the "format" argument.

Usage

readUserSample(filePath, fileName, hasHeader = TRUE, separator = ",",
  verbose = TRUE, format = "%m/%d/%Y")

Arguments

filePath	character specifying the path to the file. If it is in the working directory, use ".".
fileName	character name of file to open
hasHeader	logical true if the first row of data is the column headers
separator	character character that separates data cells. , default is "," which is separator used in a .csv file.
verbose	logical specifying whether or not to display progress message
format	character indicating the format of the date (which should be in the first column). Default is "%m\/%d/%Y". See ?strptime for options. The code will initially look for R's standard YYYY-MM-DD, and check this format as a backup.

Value

A data frame 'Sample' with the following columns:

Name	Type	Description
Date	Date	Date
ConcLow	numeric	Lower limit of concentration
ConcHigh	numeric	Upper limit of concentration
Uncen	integer	Uncensored data (1=TRUE, 0=FALSE)
ConcAve	numeric	Average concentration
Julian	integer	Number of days since Jan. 1, 1850
Month	integer	Month of the year [1-12]
Day	integer	Day of the year [1-366]
DecYear	numeric	Decimal year
MonthSeq	integer	Number of months since January 1, 1850
SinDY	numeric	Sine of the DecYear
CosDY	numeric	Cosine of the DecYear

See Also

compressData, populateSampleColumns

Examples

filePath <- system.file("extdata", package="EGRET")
fileName <- 'ChoptankRiverNitrate.csv'
Sample <- readUserSample(filePath,fileName, separator=";",verbose=FALSE)

EGRET documentation built on April 18, 2023, 5:09 p.m.