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#' @name MSReplicator
#' @title Maynard Smith replicator dynamic
#' @description Maynard Smith replicator dynamic as a type of evolutionary
#' dynamics.
#' @aliases MSReplicator
#' @export MSReplicator
#' @author Daniel Gebele \email{dngebele@@gmail.com}
#' @param time Regular sequence that represents the time sequence under which
#' simulation takes place.
#' @param state Numeric vector that represents the initial state.
#' @param parameters Numeric vector that represents parameters needed by the
#' dynamic.
#' @return Numeric list. Each component represents the rate of change depending on
#' the dynamic.
#' @references Smith, J. M. (1982)
#' "Evolution and the Theory of Games",
#' Cambridge University Press.
#' @examples
#' dynamic <- MSReplicator
#' A <- matrix(c(0, -2, 1, 1, 0, -2, -2, 1, 0), 3, byrow=TRUE)
#' state <- matrix(c(0.4, 0.3, 0.3), 1, 3, byrow=TRUE)
#' phaseDiagram3S(A, dynamic, NULL, state, FALSE, FALSE)
MSReplicator <- function(time, state, parameters) {
a <- parameters
states <- sqrt(length(a))
A <- matrix(a, states, byrow = TRUE)
A <- t(A)
minVal <- min(A)
# rescale payoff matrix
if(minVal <= 0) {
A <- A + (1 + abs(minVal))
}
dX <- c()
for(i in 1:states) {
dX[i] <- sum(state * A[i, ])
}
avgFitness <- sum(dX * state)
for(i in 1:states) {
dX[i] <- (state[i] * (dX[i] - avgFitness)) / avgFitness
}
return(list(dX))
}
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