ClusterShannonInfo: Shannon Information
In FCPS: Fundamental Clustering Problems Suite

ClusterShannonInfo

R Documentation

Shannon Information

Description

Shannon Information [Shannon, 1948] for each column in ClsMatrix.

Usage

ClusterShannonInfo(ClsMatrix)

Arguments

ClsMatrix

[1:n,1:C] matrix of C clusterings each columns is defined as:

1:n numerical vector of numbers defining the classification as the main output of the clustering algorithm for the n cases of data. It has k unique numbers representing the arbitrary labels of the clustering.

Details

Info[1:d] = sum(-p * log(p)/MaxInfo) for all unique cases with probability p in ClsMatrix[,c] for a column with k clusters MaxInfo = -(1/k)*log(1/k)

Value

`Info`	[1:max.nc,1:C] matrix of Shannin informaton as defined in details, each column represents one `Cls` of `ClsMatrix`,each row yields the information of one cluster up the `ClusterNo` k, if k<max.nc (highest number of clusters) then NaN are filled.
`ClusterNo`	Number of Clusters k found for each `Cls` respectively
`MaxInfo`	max per column of `Info`
`MinInfo`	min per column of `Info`
`MedianInfo`	median per column of `Info`
`MeanInfo`	mean per column of `Info`

Note

reeimplemented from Alfred's Ultsch Matlab version but not verified yet.

Author(s)

Michael Thrun

References

[Shannon, 1948] Shannon, C. E.: A Mathematical Theory of Communication, Bell System Technical Journal, Vol. 27(3), pp. 379-423. doi doi:10.1002/j.1538-7305.1948.tb01338.x, 1948.

Examples

# Reading the iris dataset from the standard R-Package datasets
data <- as.matrix(iris[,1:4])
max.nc = 7
# Creating the clusterings for the data set
#(here with method complete) for the number of classes 2 to 8
hc <- hclust(dist(data), method = "complete")
clsm <- matrix(data = 0, nrow = dim(data)[1],

ncol = max.nc)
for (i in 2:(max.nc+1)) {
  clsm[,i-1] <- cutree(hc,i)
}

ClusterShannonInfo(clsm)

FCPS documentation built on Oct. 19, 2023, 5:06 p.m.