Fragman: Fragment Analysis in R

Performs fragment analysis using genetic data coming from capillary electrophoresis machines. These are files with FSA extension which stands for FASTA-type file, and .txt files from Beckman CEQ 8000 system, both contain DNA fragment intensities read by machinery. In addition to visualization, it performs automatic scoring of SSRs (Sample Sequence Repeats; a type of genetic marker very common across the genome) and other type of PCR markers (standing for Polymerase Chain Reaction) in biparental populations such as F1, F2, BC (backcross), and diversity panels (collection of genetic diversity).

Package details

AuthorGiovanny Covarrubias-Pazaran, Luis Diaz-Garcia, Brandon Schlautman, Walter Salazar, Juan Zalapa.
MaintainerGiovanny Covarrubias-Pazaran <>
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the Fragman package in your browser

Any scripts or data that you put into this service are public.

Fragman documentation built on May 2, 2019, 8:26 a.m.