homo.panel: complementary tools

In Fragman: Fragment Analysis in R

Description

This functions takes a list of positions, heights and weights for ssr calls of a certain plant and uses panel information and a window to homogenize the weights of base pairs to the panel calls provided.

Usage

homo.panel(x, panel, window)

Arguments

x	list of positions, heights and weights
panel	different dna sizes usually obtained by using overview and locator functions
window	window in base pairs indicating when should be considered the same panel allele

Details

No major details.

Value

If arguments are correct the function returns a list containing

$pos

the index positions for the intensities

$hei

the intensities for the fragments found

$wei

the putative weights in base pairs based on the panel provided

References

Robert J. Henry. 2013. Molecular Markers in Plants. Wiley-Blackwell. ISBN 978-0-470-95951-0.

Ben Hui Liu. 1998. Statistical Genomics. CRC Press LLC. ISBN 0-8493-3166-8.

Examples

#No example provided, internally working to round to the closest parent ssr call.
x <- 1:10

Fragman documentation built on May 2, 2019, 8:26 a.m.