jm.conv: Scores to JoinMap converter

In Fragman: Fragment Analysis in R

Description

This function converts a data frame containing the scores from score.easy to a new data frame with joinmap calls. The parents need to be provided in the first and second row. Currently only works for CP type of crosses. From CP type to F2 and BC2 is straight forward.

Usage

jm.conv(a)

Arguments

a	A data frame containing the scores from score.easy function extracted from get.scores function containing the parental calls in the first 2 rows.

Details

No major details.

Value

If arguments are correct the function returns a new data frame

res

A new data frame with markers in joinmap format

References

Covarrubias-Pazaran G, Diaz-Garcia L, Schlautman B, Salazar W, Zalapa J. Fragman: An R package for fragment analysis. 2016. BMC Genetics 17(62):1-8.

Robert J. Henry. 2013. Molecular Markers in Plants. Wiley-Blackwell. ISBN 978-0-470-95951-0.

Ben Hui Liu. 1998. Statistical Genomics. CRC Press LLC. ISBN 0-8493-3166-8.

Examples

xx <- data.frame(cbind(a=rep(150, 96), b=c(rep(100,48), rep(150,48))))
jm.conv(xx)
# try using apply to a dataframe

Fragman documentation built on May 2, 2019, 8:26 a.m.