# Customizing thresholds

### Description

This function takes data contained in a list with 2 elements, the first containing the position in base pairs and the heights of the positions and given a panel finds the best minimum threshold by creating a confidence interval in order to get only the real peaks. Implemented internally of auto,score and score.easy function.

### Usage

1 | ```
threshs(my.plant, min.thre=200, panel, ci=1.9)
``` |

### Arguments

`my.plant` |
List with 2 elements; the position in base pairs and the heights associated with them |

`min.thre` |
Starting threshold to find the peaks and refine the search |

`panel` |
Two scalar values indicatin the interval where the peaks should be found |

`ci` |
Scalar value indicating the number of standard errors to be used when creating the confidence interval for ssr calling |

### Details

No major details.

### Value

If arguments are correctly specified the function returns a list containing

- $newthre
A scalar value indicating the new threshold to be used when calling the real peaks

### References

Robert J. Henry. 2013. Molecular Markers in Plants. Wiley-Blackwell. ISBN 978-0-470-95951-0.

Ben Hui Liu. 1998. Statistical Genomics. CRC Press LLC. ISBN 0-8493-3166-8.

### Examples

1 2 3 |