my.plants: Cranberry biparental population

Description Usage Format Details Source References Examples

Description

This dataset are 60 individuals from a progeny coming from the cross of 2 cranberry plants. Six SSR markers were run, 2 in the first channel (blue), 2 in the second channel (green), 2 in the third channel (yellow) and the Roxtrash375 ladder was run in the fourth channel (red).

Usage

1
data("my.plants")

Format

The format is: chr "my.plants"

Details

The data is basically the raw FSA files coming from the ABi machine. No more details for this data.

Source

This data was generated by the Cranberry Genomics Lab.

References

Covarrubias-Pazaran G, Diaz-Garcia L, Schlautman B, Salazar W, Zalapa J. Fragma: An R package for fragment analysis. http://horticulture.wisc.edu/cggl/ZalapaLab/People.html. 2015.

Examples

1
2
3
data(my.plants)
## look at the list structure
str(my.plants) 

Example output

List of 60
 $ FHN152-CPN01_01A_GH1x35_152-148-209_717-704-793_367-382-381.fsa  : int [1:7961, 1:4] 0 4 -14 -2 2 -14 4 -9 -5 -2 ...
 $ FHN152-CPN01_01B_BGBLNL95_152-148-210_717-704-794_367-382-382.fsa: int [1:7961, 1:4] -10 1 8 -3 0 -13 -5 6 0 3 ...
 $ FHN152-CPN01_01C_GH1x35_152-148-211_717-704-795_367-382-383.fsa  : int [1:7961, 1:4] -5 -8 10 7 -1 0 -6 -3 -18 -6 ...
 $ FHN152-CPN01_01D_BGBLNL95_152-148-212_717-704-796_367-382-384.fsa: int [1:7961, 1:4] 9 -1 -5 -1 -6 -12 4 -21 -16 -14 ...
 $ FHN152-CPN01_01E_Plant-3_152-148-213_717-704-797_367-382-385.fsa : int [1:7961, 1:4] -5 -13 -10 9 -9 -4 2 9 -7 6 ...
 $ FHN152-CPN01_01F_Plant-4_152-148-214_717-704-798_367-382-386.fsa : int [1:7961, 1:4] 0 3 -2 -11 -12 5 12 0 -2 4 ...
 $ FHN152-CPN01_01G_Plant-5_152-148-215_717-704-799_367-382-387.fsa : int [1:7961, 1:4] -7 -6 -10 -20 1 -2 -12 5 1 0 ...
 $ FHN152-CPN01_01H_Plant-6_152-148-216_717-704-800_367-382-388.fsa : int [1:7961, 1:4] -6 7 2 3 0 -7 -7 -8 -2 -3 ...
 $ FHN152-CPN01_02A_Plant-7_152-148-217_717-704-801_367-382-389.fsa : int [1:7961, 1:4] -6 10 1 18 -5 -3 3 1 -8 5 ...
 $ FHN152-CPN01_02B_Plant-8_152-148-218_717-704-802_367-382-390.fsa : int [1:7961, 1:4] 8 -18 4 -10 5 -5 -2 -1 -7 2 ...
 $ FHN152-CPN01_02C_Plant-9_152-148-219_717-704-803_367-382-391.fsa : int [1:7961, 1:4] -9 -9 -6 -14 -2 2 -4 -7 -7 1 ...
 $ FHN152-CPN01_02D_Plant-10_152-148-220_717-704-804_367-382-392.fsa: int [1:7961, 1:4] -3 11 -15 0 -8 -13 3 4 -2 6 ...
 $ FHN152-CPN01_02E_Plant-11_152-148-221_717-704-805_367-382-393.fsa: int [1:7961, 1:4] -4 -6 9 -6 -14 2 0 -10 -9 -4 ...
 $ FHN152-CPN01_02F_Plant-12_152-148-222_717-704-806_367-382-394.fsa: int [1:7961, 1:4] -4 -1 1 -12 0 -11 8 -11 -9 7 ...
 $ FHN152-CPN01_02G_Plant-13_152-148-223_717-704-807_367-382-395.fsa: int [1:7961, 1:4] -2 -6 8 -7 -22 -4 -5 -8 -11 -11 ...
 $ FHN152-CPN01_02H_Plant-14_152-148-224_717-704-808_367-382-396.fsa: int [1:7961, 1:4] 4 9 -7 -8 0 1 -18 2 0 -7 ...
 $ FHN152-CPN01_03A_Plant-15_152-148-225_717-704-809_367-382-397.fsa: int [1:7961, 1:4] -9 6 0 5 9 -4 3 0 -7 -4 ...
 $ FHN152-CPN01_03B_Plant-16_152-148-226_717-704-810_367-382-398.fsa: int [1:7961, 1:4] 7 -3 11 9 3 0 2 -8 -9 7 ...
 $ FHN152-CPN01_03C_Plant-17_152-148-227_717-704-811_367-382-399.fsa: int [1:7961, 1:4] -1 -2 -2 -3 7 -9 0 -15 6 -9 ...
 $ FHN152-CPN01_03D_Plant-18_152-148-228_717-704-812_367-382-400.fsa: int [1:7961, 1:4] -15 10 -5 2 -4 3 6 11 -7 -4 ...
 $ FHN152-CPN01_03E_Plant-19_152-148-229_717-704-813_367-382-401.fsa: int [1:7961, 1:4] -7 2 -4 6 4 -1 0 0 -1 -2 ...
 $ FHN152-CPN01_03F_Plant-20_152-148-230_717-704-814_367-382-402.fsa: int [1:7961, 1:4] 12 4 0 0 7 -4 -7 -7 -2 12 ...
 $ FHN152-CPN01_03G_Plant-21_152-148-231_717-704-815_367-382-403.fsa: int [1:7961, 1:4] -10 -4 0 -18 -9 -11 -8 -12 -2 -6 ...
 $ FHN152-CPN01_03H_Plant-22_152-148-232_717-704-816_367-382-404.fsa: int [1:7961, 1:4] 4 -5 -1 -5 3 -4 5 -5 7 7 ...
 $ FHN152-CPN01_04A_Plant-23_152-148-233_717-704-817_367-382-405.fsa: int [1:7961, 1:4] -4 2 -6 8 0 -8 -3 11 1 9 ...
 $ FHN152-CPN01_04B_Plant-24_152-148-234_717-704-818_367-382-406.fsa: int [1:7961, 1:4] 6 -3 -8 11 13 0 12 19 2 11 ...
 $ FHN152-CPN01_04C_Plant-25_152-148-235_717-704-819_367-382-407.fsa: int [1:7961, 1:4] 0 -9 2 14 5 5 -9 -1 8 9 ...
 $ FHN152-CPN01_04D_Plant-26_152-148-236_717-704-820_367-382-408.fsa: int [1:7961, 1:4] 18 11 21 19 10 8 27 33 15 20 ...
 $ FHN152-CPN01_04E_Plant-27_152-148-237_717-704-821_367-382-409.fsa: int [1:7961, 1:4] 4 0 2 -1 6 1 12 0 9 15 ...
 $ FHN152-CPN01_04F_Plant-28_152-148-238_717-704-822_367-382-410.fsa: int [1:7961, 1:4] 5 7 1 9 6 4 5 6 4 8 ...
 $ FHN152-CPN01_04G_Plant-29_152-148-239_717-704-823_367-382-411.fsa: int [1:7961, 1:4] -10 -7 -11 0 10 -3 -6 0 3 0 ...
 $ FHN152-CPN01_04H_Plant-30_152-148-240_717-704-824_367-382-412.fsa: int [1:7961, 1:4] 3 9 -6 -4 -2 6 -10 -3 -9 9 ...
 $ FHN152-CPN01_05A_Plant-31_152-148-241_717-704-825_367-382-413.fsa: int [1:7961, 1:4] 7 -6 5 2 -3 1 -8 -11 -4 11 ...
 $ FHN152-CPN01_05B_Plant-32_152-148-242_717-704-826_367-382-414.fsa: int [1:7961, 1:4] -14 -1 2 -5 1 -5 -8 4 -5 -10 ...
 $ FHN152-CPN01_05C_Plant-33_152-148-243_717-704-827_367-382-415.fsa: int [1:7961, 1:4] -8 -7 -2 14 9 -15 7 -7 6 7 ...
 $ FHN152-CPN01_05D_Plant-34_152-148-244_717-704-828_367-382-416.fsa: int [1:7961, 1:4] 7 5 -4 2 7 0 12 2 -4 7 ...
 $ FHN152-CPN01_05E_Plant-35_152-148-245_717-704-829_367-382-417.fsa: int [1:7961, 1:4] 0 7 6 -13 -6 0 3 6 12 -4 ...
 $ FHN152-CPN01_05F_Plant-36_152-148-246_717-704-830_367-382-418.fsa: int [1:7961, 1:4] 0 0 -8 2 -14 1 0 9 -4 -6 ...
 $ FHN152-CPN01_05G_Plant-37_152-148-247_717-704-831_367-382-419.fsa: int [1:7961, 1:4] -2 -3 8 8 -9 -3 -8 -6 -6 6 ...
 $ FHN152-CPN01_05H_Plant-38_152-148-248_717-704-832_367-382-420.fsa: int [1:7961, 1:4] -10 -7 1 -10 4 -7 8 9 -5 -15 ...
 $ FHN152-CPN01_06A_Plant-41_152-148-249_717-704-833_367-382-421.fsa: int [1:7961, 1:4] 5 0 -4 0 -1 -7 2 -7 -4 -1 ...
 $ FHN152-CPN01_06B_Plant-42_152-148-250_717-704-834_367-382-422.fsa: int [1:7961, 1:4] 0 0 -8 -7 4 -2 3 0 -3 -3 ...
 $ FHN152-CPN01_06C_Plant-43_152-148-251_717-704-835_367-382-423.fsa: int [1:7961, 1:4] 9 -3 6 3 2 3 -5 -2 12 -2 ...
 $ FHN152-CPN01_06D_Plant-44_152-148-252_717-704-836_367-382-424.fsa: int [1:7961, 1:4] 19 21 1 9 2 0 7 -2 2 6 ...
 $ FHN152-CPN01_06E_Plant-45_152-148-253_717-704-837_367-382-425.fsa: int [1:7961, 1:4] -5 7 1 -8 -3 -7 1 3 4 7 ...
 $ FHN152-CPN01_06F_Plant-46_152-148-254_717-704-838_367-382-426.fsa: int [1:7961, 1:4] 5 2 8 -15 -7 4 0 -3 -1 16 ...
 $ FHN152-CPN01_06G_Plant-47_152-148-255_717-704-839_367-382-427.fsa: int [1:7961, 1:4] -2 12 13 3 5 11 5 19 -5 -4 ...
 $ FHN152-CPN01_06H_Plant-48_152-148-256_717-704-840_367-382-428.fsa: int [1:7961, 1:4] 7 -2 -16 -1 4 3 0 -1 -20 2 ...
 $ FHN152-CPN01_07A_Plant-49_152-148-257_717-704-841_367-382-429.fsa: int [1:7961, 1:4] 1 -2 4 -7 3 -5 5 -13 -14 -9 ...
 $ FHN152-CPN01_07B_Plant-50_152-148-258_717-704-842_367-382-430.fsa: int [1:7961, 1:4] 0 7 -9 0 -5 -10 16 -6 -2 6 ...
 $ FHN152-CPN01_07C_Plant-51_152-148-259_717-704-843_367-382-431.fsa: int [1:7961, 1:4] -3 0 4 14 -2 0 12 -2 -1 -6 ...
 $ FHN152-CPN01_07D_Plant-52_152-148-260_717-704-844_367-382-432.fsa: int [1:7961, 1:4] -11 -7 -7 1 4 6 15 -1 10 3 ...
 $ FHN152-CPN01_07E_Plant-53_152-148-261_717-704-845_367-382-433.fsa: int [1:7961, 1:4] -9 3 4 2 3 -16 -5 2 -15 -9 ...
 $ FHN152-CPN01_07F_Plant-54_152-148-262_717-704-846_367-382-434.fsa: int [1:7961, 1:4] 2 10 -17 -4 -7 5 1 -2 8 -5 ...
 $ FHN152-CPN01_07G_Plant-55_152-148-263_717-704-847_367-382-435.fsa: int [1:7961, 1:4] -15 0 6 1 3 -24 0 1 -10 -5 ...
 $ FHN152-CPN01_07H_Plant-56_152-148-264_717-704-848_367-382-436.fsa: int [1:7961, 1:4] -1 -4 -4 4 -2 4 -2 -2 -6 8 ...
 $ FHN152-CPN01_08A_Plant-57_152-148-265_717-704-849_367-382-437.fsa: int [1:7961, 1:4] 5 -3 9 2 -5 -8 5 -2 2 4 ...
 $ FHN152-CPN01_08B_Plant-58_152-148-266_717-704-850_367-382-438.fsa: int [1:7961, 1:4] -2 -2 8 -8 -4 5 7 -10 -9 14 ...
 $ FHN152-CPN01_08C_Plant-59_152-148-267_717-704-851_367-382-439.fsa: int [1:7961, 1:4] 1 2 2 13 21 -7 12 1 10 1 ...
 $ FHN152-CPN01_08D_Plant-60_152-148-268_717-704-852_367-382-440.fsa: int [1:7961, 1:4] 14 0 -17 1 1 -5 11 7 0 -5 ...

Fragman documentation built on Jan. 14, 2018, 5:04 p.m.