num.to.lett: Number to Letter code converter
In Fragman: Fragment Analysis in R
Description
Usage
Arguments
Details
Value
References
Examples
Description
This function converts dataframes with rounded calls (numeric format in 2 cells), to letter format based on the GBS pipeline developed by Elshire et al. (2011) which can be used as intermediate step to transform to joinmap and Onemap formats, it requires mother and father in first and second row
Usage
1
num.to.lett(xx)
Arguments
xx
matrix with numbers, every 2 columns is a marker and each row is an individual, parents are located in the first 2 rows
Details
No major details.
Value
If arguments are correct the function returns a list containing
- xx2
matrix coded in letter format where each column is a marker and each row is an individual
References
Covarrubias-Pazaran G, Diaz-Garcia L, Schlautman B, Salazar W, Zalapa J. Fragman: An R package for fragment analysis. 2016. BMC Genetics 17(62):1-8.
Robert J. Henry. 2013. Molecular Markers in Plants. Wiley-Blackwell. ISBN 978-0-470-95951-0.
Ben Hui Liu. 1998. Statistical Genomics. CRC Press LLC. ISBN 0-8493-3166-8.
Examples
1
2
xx <- data.frame(cbind(a=rep(150, 96), b=c(rep(100,48), rep(150,48))))
num.to.lett(xx)
Fragman documentation built on May 2, 2019, 8:26 a.m.
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Description Usage Arguments Details Value References Examples
Description
This function converts dataframes with rounded calls (numeric format in 2 cells), to letter format based on the GBS pipeline developed by Elshire et al. (2011) which can be used as intermediate step to transform to joinmap and Onemap formats, it requires mother and father in first and second row
Usage
1 | num.to.lett(xx)
|
Arguments
xx |
matrix with numbers, every 2 columns is a marker and each row is an individual, parents are located in the first 2 rows |
Details
No major details.
Value
If arguments are correct the function returns a list containing
- xx2
matrix coded in letter format where each column is a marker and each row is an individual
References
Covarrubias-Pazaran G, Diaz-Garcia L, Schlautman B, Salazar W, Zalapa J. Fragman: An R package for fragment analysis. 2016. BMC Genetics 17(62):1-8.
Robert J. Henry. 2013. Molecular Markers in Plants. Wiley-Blackwell. ISBN 978-0-470-95951-0.
Ben Hui Liu. 1998. Statistical Genomics. CRC Press LLC. ISBN 0-8493-3166-8.
Examples
1 2 | xx <- data.frame(cbind(a=rep(150, 96), b=c(rep(100,48), rep(150,48))))
num.to.lett(xx)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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