Man pages for Fragman
Fragment Analysis in R
| arrange.jm | Arrange data converted to joinmap code into a joinmap... |
| best.layout | complementary tools for layout |
| big.peaks.col | Peak search by first derivatives |
| detect.ladder | Ladder detection by correlation or confidence intervals |
| find.ladder | Ladder detection by correlation or confidence intervals |
| Fragman-package | Fragment analysis and automatic scoring |
| get.scores | complementary tools |
| homogenize.to.parentals | complementary tools |
| homo.panel | complementary tools |
| jm.conv | Scores to JoinMap converter |
| ladder.corrector | Ladder corrector attached to R environment |
| ladder.info.attach | Ladder detection and attachment to R environment |
| lapply_pb | complementary tools for Fragman |
| letter.to.jm | Letter to JoinMap code converter |
| my.plants | Cranberry biparental population |
| num.to.lett | Number to Letter code converter |
| overview | Assesing several plants with an overview |
| overview2 | Assesing several plants with an overview |
| plot | plot form fsa files stored with storing.inds |
| pullup | Applying pullup to channels/colors |
| read.abif | Read ABIF formatted files |
| reals | Finding the real peaks |
| saturate | Checking and correcting saturated peaks |
| score.markers | Fragment analysis scoring |
| separate | Separating peaks by a shift window |
| storing.inds | Extracting channel information |
| threshs | Customizing thresholds |
| transfft | Applying the fourier transformation to a data frame |
| transp | Creating color with transparency |
