Man pages for GALLO
Genomic Annotation in Livestock for Positional Candidate LOci
| autoStopCluster | Sub-function to auto-stop the clusters created for parallel... |
| find_genes_qtls_around_markers | Search genes and QTLs around candidate regions |
| gffQTLs | A gff example for QTL annotation |
| Global | Global variables |
| gtfGenes | A gtf example for gene annotation |
| import_gff_gtf | Import .gtf and .gff files to be used during gene and QTL... |
| overlapping_among_groups | Overlapping between grouping factors |
| plot_overlapping | Plot overlapping between data and grouping factors |
| plot_qtl_info | Plot QTLs information from the find_genes_qtls_around_markers... |
| qtl_enrich | Performs a QTL enrichment analysis based in a Bootstrap... |
| QTLenrich_plot | Plot enrichment results for QTL enrichment analysis |
| QTLmarkers | Candidate markers identified by GWAS associated with... |
| QTLwindows | Candidate windows identified by GWAS associated with... |
| relationship_plot | Plot relationship between data and grouping factors |
| splitQTL_comment | Sub-function to split comment column from QTL output |
| sub_genes_markers | Sub-function to search genes around candidate markers |
| sub_genes_windows | Sub-function to search genes around candidate markers |
| sub_qtlEnrich_chrom | Performs a QTL enrichment analysis based in a Bootstrap... |
| sub_qtlEnrich_geno | Performs a QTL enrichment analysis based in a Bootstrap... |
| sub_qtl_markers | Sub-function to search QTLs around candidate markers |
| sub_qtl_windows | Sub-function to search QTLs around candidate markers |
