sub_qtlEnrich_chrom: Performs a QTL enrichment analysis based in a Bootstrap...

Description Usage Arguments Value

Description

Takes the output from find_genes_qtls_around_markers and run a QTL enrichment analysis

Usage

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sub_qtlEnrich_chom(
  qtl_file,
  qtl_type,
  qtl.file.types,
  table.qtl.class,
  padj,
  qtl_db,
  search_qtl,
  nThreads
)

Arguments

qtl_file

The output from find_genes_qtls_around_markers function

qtl_type

A string indicating with QTL enrichment will be performed: "QTL_type" or "Name"

qtl.file.types

A vector with the observed QTL classes

table.qtl.class

An frequency table for the number of each QTL in each chromosome

qtl_db

The QTL annotation database

search_qtl

The column to perform the QTL searching in counting from the QTL annotation database

nThreads

Number of threads for parallel processing

Value

A data frame with the p-value for th enrichment result


GALLO documentation built on April 8, 2021, 5:08 p.m.