sub_genes_markers: Sub-function to search genes around candidate markers
In GALLO: Genomic Annotation in Livestock for Positional Candidate LOci
View source: R/sub_genes_markers.R
sub_genes_markers R Documentation
Sub-function to search genes around candidate markers
Description
Takes a list of candidate markers and search for genes a determined interval
Usage
sub_genes_markers(chr_list, db_file, marker_file, nThreads = NULL, int = 0)
Arguments
chr_list
"Object with the chromosomes to be analyzed"
db_file
Data frame with the information from .gtf file
marker_file
Data frame with the information from the candidate regions file
nThreads
The number of threads to be used
int
The interval in base pair
Value
A dataframe with the genes or QTLs mapped within the specified intervals
GALLO documentation built on June 22, 2024, 9:17 a.m.
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View source: R/sub_genes_markers.R
| sub_genes_markers | R Documentation |
Sub-function to search genes around candidate markers
Description
Takes a list of candidate markers and search for genes a determined interval
Usage
sub_genes_markers(chr_list, db_file, marker_file, nThreads = NULL, int = 0)
Arguments
chr_list |
"Object with the chromosomes to be analyzed" |
db_file |
Data frame with the information from .gtf file |
marker_file |
Data frame with the information from the candidate regions file |
nThreads |
The number of threads to be used |
int |
The interval in base pair |
Value
A dataframe with the genes or QTLs mapped within the specified intervals
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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